LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo10g01942	ATGCATGTCCATAACACTAACAAATTGGATAAGCCTTACAAGCTGAAACTAAACAAGTTTGCTGACATGACCAACCATGAATTCAGGAGTACCTATGCTGGCTCAAAGGTTAATCACCATAGAATGTTCAGAGGCACGCCACGTGGGAATGGTGCCTTCATGTATGAGAAGGTTGGCAGTGTTCCTCCTTCTGTGGATTGGAGGAAGAAAGGTGCTGTCACTGATGTAAAAGATCAAGGCCAATGTGGTAGCTGTTGGGCGTTTTCAACTGTTGTAGCTGTTGAAGGCATTAACCAAATCAAGACAAATAAGCTAGTCTCCTTGTCTGAACAAGAGCTGGTGGACTGTGACACCAAAGAAAATCAAGGATGCAATGGTGGGTTAATGGAATCTGCTTTCGAGTTCATCAAGCAGAAGGGAGGCATAACAGCAGAAAGCAATTACCCTTACACAGCAAATGAAGGAACCTGTGATGCATCAAAGGCGAATGACCTAGCTGTGTCAATTGATGGCCATGAGAATGTCCCTGCTAATGATGAAAATGCATTGCTCAAAGCTGTTGCCAACCAACCTGTCTCAGTAGCCATAGATGCTGGGGGATCTGATTTCCAGTTCTACTCTGAGGGAGTATTTACTGGTGATTGTAGCACAGAGCTAAATCATGGTGTAGCCATTGTGGGGTATGGAACAACTGTTGATGGGACTAATTACTGGATAGTGAGGAACTCTTGGGGACCAGAATGGGGAGAACAGGGTTACATCAGAATGCAAAGGAATGTATCTAACAAGGAGGGACTTTGTGGCATAGCAATGTTGGCTTCCTACCCAATCAAAAACTCCTCCAATAATCCAACAGGACCTTCATCATCTCCCAAAGATGAACTTTGA	888	0.4414	MHVHNTNKLDKPYKLKLNKFADMTNHEFRSTYAGSKVNHHRMFRGTPRGNGAFMYEKVGSVPPSVDWRKKGAVTDVKDQGQCGSCWAFSTVVAVEGINQIKTNKLVSLSEQELVDCDTKENQGCNGGLMESAFEFIKQKGGITAESNYPYTANEGTCDASKANDLAVSIDGHENVPANDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGDCSTELNHGVAIVGYGTTVDGTNYWIVRNSWGPEWGEQGYIRMQRNVSNKEGLCGIAMLASYPIKNSSNNPTGPSSSPKDEL	295

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo10g01942	295	Gene3D	Cysteine proteinases	1	279	-	-
	Pumo10g01942	295	SUPERFAMILY	Cysteine proteinases	13	278	IPR038765	-
	Pumo10g01942	295	PANTHER	CYSTEINE PROTEASE FAMILY C1-RELATED	11	271	IPR013128	GO:0008234
	Pumo10g01942	295	CDD	Peptidase_C1A	62	276	IPR039417	-
	Pumo10g01942	295	FunFam	Senescence-specific cysteine protease SAG39	1	278	-	-
	Pumo10g01942	295	ProSitePatterns	Eukaryotic thiol (cysteine) proteases asparagine active site.	237	256	IPR025661	-
	Pumo10g01942	295	ProSitePatterns	Eukaryotic thiol (cysteine) proteases histidine active site.	219	229	IPR025660	-
	Pumo10g01942	295	PRINTS	Papain cysteine protease (C1) family signature	79	94	IPR000668	GO:0006508\|GO:0008234
	Pumo10g01942	295	PRINTS	Papain cysteine protease (C1) family signature	221	231	IPR000668	GO:0006508\|GO:0008234
	Pumo10g01942	295	PRINTS	Papain cysteine protease (C1) family signature	237	243	IPR000668	GO:0006508\|GO:0008234
	Pumo10g01942	295	Pfam	Papain family cysteine protease	61	277	IPR000668	GO:0006508\|GO:0008234
	Pumo10g01942	295	ProSitePatterns	Eukaryotic thiol (cysteine) proteases cysteine active site.	79	90	IPR000169	-
	Pumo10g01942	295	SMART	pept_c1	61	277	IPR000668	GO:0006508\|GO:0008234

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo10g01942	Pumo-Chr10	25605900	25608094	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo10g01942	K16292		-	gmx:548011	587.8

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo10g01942	10	25605900	25608094	Pumo10g01942	10	25605900	25608094	ECH
	Pumo4g01492	4	18845983	18848679	Pumo10g01942	10	25605900	25608094	PCT