Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01457 ATGGATCCCAACCCAGGAAACTTCCCCATTCTCTCCTACGTCATGTCCCGTCTCCCTTCCTTCGGTGCCAGAACCCCCACCGCCACTTCCCCTTCCCCTTCCCATTCCCATCATTACGACATCGAACAACCACCTTCCTCTTCTTCTCCTTCTCCTTCGTCAATCGTGGGCCAAATGCCGAATCTCGCGGACCCCGAAATGTTGGCCTCCATGACCCGCGCCATCTCCGACGTCTCCCAGGCCCGATCCGTCCTCAAGCTCATCGGGGCCCGCCCCACCCACGAGGAGGTCGACGACGCCAAGGCCAAGCTCGCCGACCTCGAGGCCCACCTCTCCCGCCAGTTGGAAGAGATCGTGGGCCTCCCCAGGCCCCCCGAGATCGACGAGCCCCGCTGGCGGGCCCACATCGCTGATAAAGAGAACGCCTGCAAGGAATCCACGGAGAAAGAGAAGCGCATCCTCAAGTCGCTGATTCAGCTCGACCAGATGCACGACTCCTACGAGAAGCTCCTCAAGGACGCCGAGAAGCGCCTGGTCAAGATTTACGACGACGATGGTGACAACGACAACGAAAACGAAAACGACAATGGTGCTGAAGTGAAAGAACAGGTTGAGGAGATATTGCATGAGGCCTACGGAAAAGGGGTGGAGCGAGTGGATCTTTCGGGGAAGCGTCTCAAGCTCCTGCCTGAAGCGTTTGGCCGCATTCCTGCATTGGTGGTGCTCGATGTCTCTACCAATCAACTTTCGGTGATTCCTGACTCGATATCTGGATTGCAAAATCTTGAGGAGCTTAATGTCTCTTCCAATGCTTTGGAGTCACTGCCAGATTCAATTGGCATGTTGCAGAAGTTGAAATTCCTCAATGTGTCCGGAAACAAGCTCAGTGCTCTTCCTGATTCCATCAGTCAGTGCAGGTCATTGGTGGAGCTAGATGCAGGCTTTAATAGCCTGACATATTTGCCAACAAACATCGGATATGAATTGCTTAATTTACAGAAGCTCTTGATTCAGTTGAACAAGATTCGGTCTCTTCCCTCATCCGTTTGTGAGATGAAATCCTTGCGCTATCTTGATGCTCACTTTAATGAGCTGCGAGGGCTTCCTATTGCAATCGGGAAATTGACTAATCTAGAAGTTCTAAACCTGAGCAGTAACTTCAGTGACCTCAAAGAACTTCCAGAGACATTTGGTGATCTGATTAGCCTCAGGGAATTGGATCTCAGCAACAACCAAATTCATGCACTTCCTGATACTTTTGGTCGCCTTGATAATTTGACAAAGCTAAACTTGGATCAGAATCCTCTTGAAGTGCCACCGATGGAGATTGTAAGCCAAGGGGTCCAAGCCGTAAAGATTTTCATGAACCAGAGGTGGATTGATATATTGGCAGAGGAAGAAAGAAAAAGCACGCAAGTGTTGCAGGAACAAGGACAGAATGGCTGGTTAACACGAAGCATCTCAATGCTGAAGAATGTTTCTGATAATGTAACTGAGATGATTATGTCCCCCAGAACTCCCAAAGATTCTTTTCTTGATCAGCAGCTATGA 1551 0.5016 MDPNPGNFPILSYVMSRLPSFGARTPTATSPSPSHSHHYDIEQPPSSSSPSPSSIVGQMPNLADPEMLASMTRAISDVSQARSVLKLIGARPTHEEVDDAKAKLADLEAHLSRQLEEIVGLPRPPEIDEPRWRAHIADKENACKESTEKEKRILKSLIQLDQMHDSYEKLLKDAEKRLVKIYDDDGDNDNENENDNGAEVKEQVEEILHEAYGKGVERVDLSGKRLKLLPEAFGRIPALVVLDVSTNQLSVIPDSISGLQNLEELNVSSNALESLPDSIGMLQKLKFLNVSGNKLSALPDSISQCRSLVELDAGFNSLTYLPTNIGYELLNLQKLLIQLNKIRSLPSSVCEMKSLRYLDAHFNELRGLPIAIGKLTNLEVLNLSSNFSDLKELPETFGDLISLRELDLSNNQIHALPDTFGRLDNLTKLNLDQNPLEVPPMEIVSQGVQAVKIFMNQRWIDILAEEERKSTQVLQEQGQNGWLTRSISMLKNVSDNVTEMIMSPRTPKDSFLDQQL 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01457 516 ProSiteProfiles Leucine-rich repeat profile. 284 305 IPR001611 GO:0005515
Pumo4g01457 516 Coils Coil 157 184 - -
Pumo4g01457 516 Coils Coil 97 117 - -
Pumo4g01457 516 Gene3D Ribonuclease Inhibitor 133 318 IPR032675 -
Pumo4g01457 516 Coils Coil 190 210 - -
Pumo4g01457 516 FunFam Plant intracellular Ras-group-related LRR protein 9 139 320 - -
Pumo4g01457 516 SUPERFAMILY L domain-like 211 441 - -
Pumo4g01457 516 ProSiteProfiles Leucine-rich repeat profile. 402 423 IPR001611 GO:0005515
Pumo4g01457 516 SMART LRR_bac_2 236 255 - -
Pumo4g01457 516 SMART LRR_bac_2 375 396 - -
Pumo4g01457 516 SMART LRR_bac_2 329 348 - -
Pumo4g01457 516 SMART LRR_bac_2 352 371 - -
Pumo4g01457 516 SMART LRR_bac_2 305 324 - -
Pumo4g01457 516 SMART LRR_bac_2 282 301 - -
Pumo4g01457 516 SMART LRR_bac_2 259 278 - -
Pumo4g01457 516 SMART LRR_bac_2 400 419 - -
Pumo4g01457 516 PANTHER LEUCINE-RICH REPEAT-CONTAINING 285 446 - -
Pumo4g01457 516 MobiDBLite consensus disorder prediction 22 58 - -
Pumo4g01457 516 Gene3D Ribonuclease Inhibitor 319 446 IPR032675 -
Pumo4g01457 516 SMART LRR_typ_2 375 399 IPR003591 -
Pumo4g01457 516 SMART LRR_typ_2 236 258 IPR003591 -
Pumo4g01457 516 SMART LRR_typ_2 259 281 IPR003591 -
Pumo4g01457 516 SMART LRR_typ_2 400 422 IPR003591 -
Pumo4g01457 516 SMART LRR_typ_2 306 328 IPR003591 -
Pumo4g01457 516 SMART LRR_typ_2 282 305 IPR003591 -
Pumo4g01457 516 SMART LRR_typ_2 423 446 IPR003591 -
Pumo4g01457 516 SMART LRR_typ_2 329 352 IPR003591 -
Pumo4g01457 516 FunFam Plant intracellular Ras-group-related LRR protein 2 324 499 - -
Pumo4g01457 516 ProSiteProfiles Leucine-rich repeat profile. 261 282 IPR001611 GO:0005515
Pumo4g01457 516 MobiDBLite consensus disorder prediction 21 60 - -
Pumo4g01457 516 Pfam Leucine rich repeat 261 318 IPR001611 GO:0005515
Pumo4g01457 516 Pfam Leucine rich repeat 394 436 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01457 Pumo-Chr4 18485069 18486853 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01457 219 475 Receptor kinase-like Gene Family AT5G56040 29.299 1.19e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01457 - - gmx:100782818 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01457 4 18485069 18486853 Pumo4g01457 4 18485069 18486853 ECH
Pumo4g01457 4 18485069 18486853 Pumo10g01975 10 26051973 26060611 PCT