Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01975 ATGGAGCGAGTCAATCTTTCTGGACGCCAGTTGAAACTCTTGCCTGAGGCTTTTGGTCGCATTTCTGGGTTGCTCGTGCTTGATCTTTCAACCAATCAACTCTCGGCAATTCCTGATTCAATAGCTGGATTGCAAAACCTTGAGGAGCTTAATCTGTCTTCAAATCTTTTGGAATCACTGCCAGATTCAATTGGGTTGTTACAGAAGTTGAAATTGCTCAATGTCTCTGGAAACAAGCTGACTGCGCTTCCTGATCCCATCTGTCAGTGCAGGTCATTGGTGGAGTTGGATGTAAGCTTTAACAATCTCTCATATCTTCCAACAAACATTGGATATGAATTACCGAACTTGCAGAAACTCATAATTCATTTGAACAAGATTCGATCCTTTCCCTCATCTATCTGTGAGTTGAAGTCCTTGCGCTATTTGGATGCTCACTTCAATGAGCTACATGGGCTTCCAATTGCCATTGGGAGACTGACTAATCTTGAAGTTCTCAACCTGAGCAGTAACTTCAGTGACCTCAAAGAACTTCCTGAGACATTTGGTGATTTGACAAACCTCAGGGAATTGGATCTCAGCAATAACCAGATTCATGTACTTCCCGTTACATTTGGTCGCCTTGATAACTTGACCAAGCTAAACTTGGAGCAGAATCCTCTTGAATTGCCACCAATGGAGATTGTAAATCAAGGGGTTGAAGCCATAAAGACCTTTATGGCCAAGAGGTGGCTTGATATATTGTTGGAGGAAGAAAGGAAAAGCAGCCAAGAAATGCAAGAACAAGAACAGGGTGGTTGGTTAACACGAAGCACCTCCTGGTTGAAGAATGTTTCTGGAAATGTAATGGGGTATATTGGAACTACAGTTGGATCTCCTATGTCACCCAAACCTCCCAGAGATCCATATCTTGATCAGCAGTTATGA 927 0.4261 MERVNLSGRQLKLLPEAFGRISGLLVLDLSTNQLSAIPDSIAGLQNLEELNLSSNLLESLPDSIGLLQKLKLLNVSGNKLTALPDPICQCRSLVELDVSFNNLSYLPTNIGYELPNLQKLIIHLNKIRSFPSSICELKSLRYLDAHFNELHGLPIAIGRLTNLEVLNLSSNFSDLKELPETFGDLTNLRELDLSNNQIHVLPVTFGRLDNLTKLNLEQNPLELPPMEIVNQGVEAIKTFMAKRWLDILLEEERKSSQEMQEQEQGGWLTRSTSWLKNVSGNVMGYIGTTVGSPMSPKPPRDPYLDQQL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01975 308 ProSiteProfiles Leucine-rich repeat profile. 187 208 IPR001611 GO:0005515
Pumo10g01975 308 Gene3D Ribonuclease Inhibitor 1 128 IPR032675 -
Pumo10g01975 308 Pfam Leucine rich repeat 91 150 IPR001611 GO:0005515
Pumo10g01975 308 Pfam Leucine rich repeat 13 57 IPR001611 GO:0005515
Pumo10g01975 308 Pfam Leucine rich repeat 161 221 IPR001611 GO:0005515
Pumo10g01975 308 PANTHER LEUCINE-RICH REPEAT-CONTAINING 79 231 - -
Pumo10g01975 308 FunFam Plant intracellular Ras-group-related LRR protein 4 1 243 - -
Pumo10g01975 308 SMART LRR_typ_2 160 184 IPR003591 -
Pumo10g01975 308 SMART LRR_typ_2 21 43 IPR003591 -
Pumo10g01975 308 SMART LRR_typ_2 44 66 IPR003591 -
Pumo10g01975 308 SMART LRR_typ_2 67 90 IPR003591 -
Pumo10g01975 308 SMART LRR_typ_2 114 137 IPR003591 -
Pumo10g01975 308 SMART LRR_typ_2 91 113 IPR003591 -
Pumo10g01975 308 SMART LRR_typ_2 185 208 IPR003591 -
Pumo10g01975 308 SUPERFAMILY L domain-like 3 226 - -
Pumo10g01975 308 SMART LRR_bac_2 137 156 - -
Pumo10g01975 308 SMART LRR_bac_2 21 40 - -
Pumo10g01975 308 SMART LRR_bac_2 67 86 - -
Pumo10g01975 308 SMART LRR_bac_2 44 63 - -
Pumo10g01975 308 SMART LRR_bac_2 90 109 - -
Pumo10g01975 308 SMART LRR_bac_2 114 133 - -
Pumo10g01975 308 SMART LRR_bac_2 160 181 - -
Pumo10g01975 308 SMART LRR_bac_2 185 204 - -
Pumo10g01975 308 Gene3D Ribonuclease Inhibitor 129 241 IPR032675 -
Pumo10g01975 308 PRINTS Leucine-rich repeat signature 24 37 - -
Pumo10g01975 308 PRINTS Leucine-rich repeat signature 185 198 - -
Pumo10g01975 308 ProSiteProfiles Leucine-rich repeat profile. 46 67 IPR001611 GO:0005515
Pumo10g01975 308 MobiDBLite consensus disorder prediction 289 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01975 Pumo-Chr10 26051973 26060611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01975 1 260 Receptor kinase-like Gene Family AT5G56040 29.022 8.01e-16 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01975 - - gmx:100803823 537.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01975 10 26051973 26060611 Pumo10g01975 10 26051973 26060611 ECH
Pumo4g01457 4 18485069 18486853 Pumo10g01975 10 26051973 26060611 PCT