Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01440 ATGAAGGCAACACTACGGTACTTAGCAGGCATTGCTGGGCCTAGTGGTTTCGGCTCAAATTCAACAGCTGAGCAAGTCACTGAAGATTGCTCTTCCTTGCTCCCTTCAAATCTAACCGCTCTCATCACTGGTGCGACTTCTGGTATTGGAGCTGAAACAGCTAGAGTGTTAGCAAAGAGAGGAGTGAGGGTTGTGATTGGTGCCAGGGACCTGAGAAAGGCCAAGGAAGTGAGAGAGAAAATCCAAAAGGAGAGTCCTCATGCTGAGGTTATTCTGTTGGAGATTGATCTTAGCTCTTTTGCTTCTGTACAGAGATTTTATTCAGAGTTTTTAGCTTTGGAACTGCCCCTTAATATTCTCATAAACAATGCAGGAATGTACTCTCAAAACTTGGAGTTCTCCGAAGAGAAAATTGAAATGACATTTGCTACAAATTACTTGGGACATTTTTTGTTAACGAAAATGCTACTAGAGAAAATGATAGATACTGCAAAGAAGACAGGCATTCAAGGAAGAATTATAAACGTTTCTTCTGTGATTCATAGCTGGGTGAAAAGATCTTGTTTTTCTTTCAACGACATGCTCTGCGGAAAAAATTACAATGGCACACGCGCATATGCTCAGTCAAAATTGGCCACAATTCTGCATGTGAAGGAAGTGGCCAGACAGCTGAAGGAAAGGAATGCAAATGTAACTATTAACGCAGTGCATCCAGGCATTGTGAAGACGGGAATTATGAGAGCACATAAGGGCTTAATAACGGATTCCCTGTTTTTCATTGCATCGAAATTACTGAAATCGATATCACAGGGTGCATCAACTACGTGTTATGTTGCTCTAAGCGGACAAACAGATGGAGTGAGTGGGAAATATTTTACAGATTGTAACGAGAGTAACTGCTCAAGGCTAGCAAACGACGAATCAGAAGCTAGAAAGCTATGGAACGACACCCATGCCTTCCTTCACAAACGGCTACGTCAAGCAACAAATTGA 993 0.4199 MKATLRYLAGIAGPSGFGSNSTAEQVTEDCSSLLPSNLTALITGATSGIGAETARVLAKRGVRVVIGARDLRKAKEVREKIQKESPHAEVILLEIDLSSFASVQRFYSEFLALELPLNILINNAGMYSQNLEFSEEKIEMTFATNYLGHFLLTKMLLEKMIDTAKKTGIQGRIINVSSVIHSWVKRSCFSFNDMLCGKNYNGTRAYAQSKLATILHVKEVARQLKERNANVTINAVHPGIVKTGIMRAHKGLITDSLFFIASKLLKSISQGASTTCYVALSGQTDGVSGKYFTDCNESNCSRLANDESEARKLWNDTHAFLHKRLRQATN 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01440 330 CDD retinol-DH_like_SDR_c_like 39 314 - -
Pumo4g01440 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 298 IPR036291 -
Pumo4g01440 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Pumo4g01440 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Pumo4g01440 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
Pumo4g01440 330 Pfam short chain dehydrogenase 39 180 IPR002347 -
Pumo4g01440 330 Pfam short chain dehydrogenase 197 247 IPR002347 -
Pumo4g01440 330 PANTHER RETINOL DEHYDROGENASE 14 316 - -
Pumo4g01440 330 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Pumo4g01440 330 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Pumo4g01440 330 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Pumo4g01440 330 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Pumo4g01440 330 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Pumo4g01440 330 Gene3D - 31 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01440 Pumo-Chr4 18252742 18255757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01440 41 248 Acyl Lipid Metabolism Gene Families AT3G55290 29.577 7.59e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01440 - - gmx:100776567 630.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01440 4 18252742 18255757 Pumo4g01440 4 18252742 18255757 ECH
Pumo4g01440 4 18252742 18255757 Pumo10g01998 10 26359556 26363226 PCT