Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01998 ATGAAGGCAACACTAAGATACTTAGCAGGAATGGCAGGCCCTAGTGGTTTTGGCTCAAATTCAACAGCTGAACAAGTTACTGAACATTGTTCTTGCTTCCTTCCTTCTGGTCTAACCGCTCTGATCACTGGGGCGAGTTCTGGTATTGGAGCTGAAACAGCAAGGGTGTTAGCAAAGAGAGGAGTGAGAGTTGTGATTGCTGCAAGAGACTTGAAGAAGGCCAGGGAAGTGAAAAAGAACATACAAAAGGAGAGTCCAAAAGCTGAGGTTATTCTGTTGGAGATTGATCTTGGCTCTTTTGGTTCTGTGCAGAGATTTTGTTCCGAGTTTTTGGCTTTAGAACTTCCCCTTAATATTCTCATAAACAATGCAGGGGTATTTTCTCAAAACTTGGAGTTCTCTGAGGATAAAATTGAGATGACATTTGCTACAAATTACTTGGGTCATTTCTTGTTAACAGAAATATTGTTAGACAAAATGATAGAGACGGCAGAGAAGACAGGTATTCAAGGAAGAATAATAAACGTTTCTTCTGTCATACATAGCTGGGTGAAGAAAGATGGTTTTCGTTTCAACGACATACTCAGTGGAAAAAAATATAATGGCACACGCGCTTATGCTCAGTCAAAATTGGCAAATATTTTGCATGCAAAGGAAATAGCCAAGCAACTCAAGGCGAGGAATGCAAGAGTAACTATCAATGCAGTACATCCAGGCATTGTGAAGACAGGAATTATTAGAGCTCACAAGGGCTTAGTAACGGATTCCCTATTTTTTATCGCATCAAAGTTACTCAAAACGACATCACAGGGTGCATCAACTACGTGTTATGTTGCACTGAGCCCCAAAACAGAAGGGATAAGTGGAAAATACTTTGCAGATTGCAATGAGAGCAAATGCTCGAGCCTAGCAAATGACGAATCGGAAGCTCAAAAGCTGTGGAACAACACCCATGCCTTGCTTCACAAACGACTGCGTCAAGCAACAACTTGA 993 0.4129 MKATLRYLAGMAGPSGFGSNSTAEQVTEHCSCFLPSGLTALITGASSGIGAETARVLAKRGVRVVIAARDLKKAREVKKNIQKESPKAEVILLEIDLGSFGSVQRFCSEFLALELPLNILINNAGVFSQNLEFSEDKIEMTFATNYLGHFLLTEILLDKMIETAEKTGIQGRIINVSSVIHSWVKKDGFRFNDILSGKKYNGTRAYAQSKLANILHAKEIAKQLKARNARVTINAVHPGIVKTGIIRAHKGLVTDSLFFIASKLLKTTSQGASTTCYVALSPKTEGISGKYFADCNESKCSSLANDESEAQKLWNNTHALLHKRLRQATT 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01998 330 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Pumo10g01998 330 PRINTS Glucose/ribitol dehydrogenase family signature 206 225 IPR002347 -
Pumo10g01998 330 PRINTS Glucose/ribitol dehydrogenase family signature 39 56 IPR002347 -
Pumo10g01998 330 PRINTS Glucose/ribitol dehydrogenase family signature 165 181 IPR002347 -
Pumo10g01998 330 PRINTS Glucose/ribitol dehydrogenase family signature 115 126 IPR002347 -
Pumo10g01998 330 Pfam short chain dehydrogenase 39 180 IPR002347 -
Pumo10g01998 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 298 IPR036291 -
Pumo10g01998 330 CDD retinol-DH_like_SDR_c_like 37 314 - -
Pumo10g01998 330 Gene3D - 31 326 - -
Pumo10g01998 330 PANTHER RETINOL DEHYDROGENASE 14 320 - -
Pumo10g01998 330 Coils Coil 64 84 - -
Pumo10g01998 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 206 225 IPR002347 -
Pumo10g01998 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 115 126 IPR002347 -
Pumo10g01998 330 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01998 Pumo-Chr10 26359556 26363226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01998 41 245 Acyl Lipid Metabolism Gene Families AT3G55290 31.429 7.17e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01998 - - gmx:100801384 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01998 10 26359556 26363226 Pumo10g01998 10 26359556 26363226 ECH
Pumo4g01440 4 18252742 18255757 Pumo10g01998 10 26359556 26363226 PCT