Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01422 ATGCAATCGTTATCGTTAAGTATGAGTCTGAGGAGTAGTAGTTTAGCGAATTTTCTGTTGCTGGGTTCGGAGGCGAGAGTGAGAAGAAGAAGGAGTGTCATCGTAGCGTGTGCTTCGGAGGGAGACACTGGTAGCAGTAGCAGTAGCACAAGCTCCTTTCTCTCTCGGACCCAAACCTACGCCCTTCTTAAGCAACAATTGCAAGTAGCTGCTAAATCTGAGGATTACAAGGAAGCAGCTAGAATTCGAGACTCGTTAAAGCTATTTGAGGACGAGGAGCCTGTTTTGCGTCTCAGAAGACTATTGAAGGAAGCAGTTGCTGAAGAGAGATTCCAGGATGCTGCTAGTTATCGTGATGAGCTAAACAAAATTGCCCCACACTCTCTTTTAAAATGTTGCAGTGATGCTACAACATTGGGAATCAGGGTTCAAGTTAGGAGTGTATATATAGAGGGCAGAAGTCAGCCTTCAAAGGGGCTATACTTCTTTGCATATAGAATAAGAATTACCAATAACTCAGACCACCCTGTTCAACTTCTTAGAAGGCATTGGATTATAACTGATGCTAATGGGAAAACGGAAAATGTCTGGGGAATTGGAGTTGTTGGCGAACAGCCATTAATACTTCCTGGGAATAGTTTTGAATACTCTTCAGCATGCCCACTGAACACACCAAATGGTAGAATGGAAGGTGACTATGAGATGATCCATGTTGATAGAGTAGGCTCGCGATCATTCAATGTGGCCATTGCGCCGTTTTCTCTCTCTCTGCTTGGAGATGATGAAGGTTGTATTATTTGA 801 0.4357 MQSLSLSMSLRSSSLANFLLLGSEARVRRRRSVIVACASEGDTGSSSSSTSSFLSRTQTYALLKQQLQVAAKSEDYKEAARIRDSLKLFEDEEPVLRLRRLLKEAVAEERFQDAASYRDELNKIAPHSLLKCCSDATTLGIRVQVRSVYIEGRSQPSKGLYFFAYRIRITNNSDHPVQLLRRHWIITDANGKTENVWGIGVVGEQPLILPGNSFEYSSACPLNTPNGRMEGDYEMIHVDRVGSRSFNVAIAPFSLSLLGDDEGCII 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01422 266 Hamap Protein ApaG [apaG]. 134 266 IPR023065 -
Pumo4g01422 266 ProSiteProfiles UVR domain profile. 57 92 IPR001943 GO:0005515
Pumo4g01422 266 PANTHER OS05G0170800 PROTEIN 35 262 - -
Pumo4g01422 266 Pfam ApaG domain 153 236 IPR007474 -
Pumo4g01422 266 Pfam UvrB/uvrC motif 97 124 IPR001943 GO:0005515
Pumo4g01422 266 Pfam UvrB/uvrC motif 63 90 IPR001943 GO:0005515
Pumo4g01422 266 ProSiteProfiles ApaG domain profile. 135 262 IPR007474 -
Pumo4g01422 266 SUPERFAMILY ApaG-like 137 256 IPR036767 -
Pumo4g01422 266 ProSiteProfiles UVR domain profile. 92 127 IPR001943 GO:0005515
Pumo4g01422 266 Gene3D ApaG domain 131 260 IPR036767 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01422 Pumo-Chr4 18007207 18011283 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01422 - K06195 gmx:100782176 476.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01422 4 18007207 18011283 Pumo4g01422 4 18007207 18011283 ECH
Pumo4g01422 4 18007207 18011283 Pumo10g02019 10 26634703 26637971 PCT