Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01406 ATGCCAGAGATTGTTACAGATGGAGTTAATAATGAAATGAATGGGATTGGGAACACTTCCACCTTGAAGGAAACCTCAAGTCCAATCAAGAAACAAAGGAGTTCCTTGATTCCACGAATAAGCCAAAGTGCTATTCCAAAATTTCCTGTTGATGGGGTGGTTGACACTTCCTCAATTGGTCGGCTTCATGAAAATGTTAGTGACGTGAAAAGTTCTGGTCAATCATCCTCAAGACAAAGTTTTGGATCCGATAGTGATGAGTCTAGAACCGATTCAGAATTGCATCGTCTAGTTGGAGGGCAGAAGAGAGAAGTGGAAAAAGTGCAAGAGGAAGTGAAGAAAAAGACAAAAGGGGATTCTAGCAGTGAAGCATCTCCCACAATGGTTAGTTTGTCCAATAATAAGAAGTTATATAAGGTGAATGAGATTCGGCCAGCAACTGCAAGTGGTGTTTTTTCACAAAAACCAAAGAAAGCAACACTATCACGGTTATCCCCTGAAACTCCATTAAGATTAAGACCAAAGGGAAATAGCCCTCCTCCAAAACCTCCAGTTGATAGGAAGAATGATAGCCCTTTGAGAAAACAAAATACAGGAGTTACCCGGGTGAAAAAAACTGTTGGTGGAAGATCACTGTCACAAAGTCACATTGAGAATTTCACTGGATCACCATTAGATAGGCCTGAGCTGGGAACAGCTTTACTAAACCAAGCAAGGAACATGATTTCATCTGGAGATAATCCGGTGAAAGCTCTTGAATTAGCTCTTCAAGCAAAGAAATTATTTGAGAGAGTTGCTGCTTATGGGAAACCAAGTTTGGATTTGGCCATGTGTTTACATGTTACTGCAGCAATATATTGCAGTTTAGGCCATTTCAAAGAAGCAATTCCAATTATAGAGCGCTCAATTGAGATTCCTACTGTTGAGGAAGGCCACCAACATGCCATTGCTAAATTTGCTGGTCACATGCATCTAGGAGATGTTTATGCTATGTTGGGCCAGCTTGAGAAATCAATTAAGTGCTACACTGAAGGGTTGAAAGTACAAAGGCAGGTTTTGGGAGAAACAGATTCAAGAGTTGGTGAAACTTGTAGGTATGTGGCTGAAGCTAACTTTCAAGCATTGCAATTTGATGAGGCAGAGAGGCTGTGCCAAATTGCCCTTGACATTCATAGAGCAAATGGTTCACCCTCATCTCTTGAAGAGGCAGCTGATAGGAGGCTAATGGGCCTTATATGTGAAGCAAATGGAAAACATGAAGCAGCCTTGGAGCACCTTGTTTTGGCCAGCATGGCAATGGTAGCAAATGGCCAAGATGGGGAAGTGGCATCTGTTGATTGCAACATTGGAGACACATACTTATCCTTGGCTAGATATGATGAGGCAATCTTTGCATATCAGAGAGCATTGACAGTTTACAAGACTCACAGAGGTGAGAATCATCCTGCTGTGGGATCAGTCTTTGTACGTCTCGCTGAGTTGTATTGCAGGACATGGAAGATAAAGGAATCAAAATCATATTGTGAGAGTGCACTTAGAATCTATGAGAATCCCATGCCTGGTGTCCCTCCAGAGGAGGTTGCTAGTGGTTTTATGAATGTCTCAGCCATCTATGAGACAATGAATGAGCTAGAACAGGCACTTAAGTTACTTCACAAGGCACTAGAGATACTTAATGAAGCCTCTGGTCAGCAAAACACAATAGCAGGAATTGAAGCTCAGATGGGGGTCATGTACTACATGCTGGAGAACTACACTGAATCTTACAATGCTTTCAAGAATGCCGTGTCGAAGCTTCGTGCTATTGGAGAGAAGAAATCAACCTTTTTTGGCACTGTTCTTAATCAAATGGGACTTGCTTGTGTGCAACGCCATGCCTTAAGTGAGGCTGCAGAATTATTTGAAGAAGCGAGAGTCATTTTGGAACAAGAGAATGGACCCTATCACCCTGAAACACTTGGAGTATATGGCAATCTTGCTGGCACGTATGATGCAATTGGAAGGTTGGATGAGGCAATTGAAATTCTGGAAAACATTGCGGTAATAAGGGAGGAAAAGCTTGGGACAGCAAGTCCTGAAGTTGCTGATGAGAAGAGAAGGTTGAATGAGTTGTTGAAGGAAACAGGCAGAGTTCGGAATAGAAAAACCAAGTCACTCGAGATCCTTTTTGATGGCTTGTGA 2181 0.4218 MPEIVTDGVNNEMNGIGNTSTLKETSSPIKKQRSSLIPRISQSAIPKFPVDGVVDTSSIGRLHENVSDVKSSGQSSSRQSFGSDSDESRTDSELHRLVGGQKREVEKVQEEVKKKTKGDSSSEASPTMVSLSNNKKLYKVNEIRPATASGVFSQKPKKATLSRLSPETPLRLRPKGNSPPPKPPVDRKNDSPLRKQNTGVTRVKKTVGGRSLSQSHIENFTGSPLDRPELGTALLNQARNMISSGDNPVKALELALQAKKLFERVAAYGKPSLDLAMCLHVTAAIYCSLGHFKEAIPIIERSIEIPTVEEGHQHAIAKFAGHMHLGDVYAMLGQLEKSIKCYTEGLKVQRQVLGETDSRVGETCRYVAEANFQALQFDEAERLCQIALDIHRANGSPSSLEEAADRRLMGLICEANGKHEAALEHLVLASMAMVANGQDGEVASVDCNIGDTYLSLARYDEAIFAYQRALTVYKTHRGENHPAVGSVFVRLAELYCRTWKIKESKSYCESALRIYENPMPGVPPEEVASGFMNVSAIYETMNELEQALKLLHKALEILNEASGQQNTIAGIEAQMGVMYYMLENYTESYNAFKNAVSKLRAIGEKKSTFFGTVLNQMGLACVQRHALSEAAELFEEARVILEQENGPYHPETLGVYGNLAGTYDAIGRLDEAIEILENIAVIREEKLGTASPEVADEKRRLNELLKETGRVRNRKTKSLEILFDGL 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01406 726 SUPERFAMILY TPR-like 228 349 IPR011990 GO:0005515
Pumo4g01406 726 MobiDBLite consensus disorder prediction 60 83 - -
Pumo4g01406 726 MobiDBLite consensus disorder prediction 11 41 - -
Pumo4g01406 726 Pfam Tetratricopeptide repeat 323 350 IPR019734 GO:0005515
Pumo4g01406 726 SMART tpr_5 611 644 IPR019734 GO:0005515
Pumo4g01406 726 SMART tpr_5 443 476 IPR019734 GO:0005515
Pumo4g01406 726 SMART tpr_5 319 352 IPR019734 GO:0005515
Pumo4g01406 726 SMART tpr_5 485 518 IPR019734 GO:0005515
Pumo4g01406 726 SMART tpr_5 528 561 IPR019734 GO:0005515
Pumo4g01406 726 SMART tpr_5 276 309 IPR019734 GO:0005515
Pumo4g01406 726 SMART tpr_5 361 394 IPR019734 GO:0005515
Pumo4g01406 726 SMART tpr_5 569 602 IPR019734 GO:0005515
Pumo4g01406 726 SMART tpr_5 403 436 IPR019734 GO:0005515
Pumo4g01406 726 SMART tpr_5 653 686 IPR019734 GO:0005515
Pumo4g01406 726 MobiDBLite consensus disorder prediction 149 199 - -
Pumo4g01406 726 ProSiteProfiles TPR repeat profile. 528 561 IPR019734 GO:0005515
Pumo4g01406 726 MobiDBLite consensus disorder prediction 1 130 - -
Pumo4g01406 726 SUPERFAMILY TPR-like 322 426 IPR011990 GO:0005515
Pumo4g01406 726 Coils Coil 541 561 - -
Pumo4g01406 726 Gene3D Tetratricopeptide repeat domain 229 403 IPR011990 GO:0005515
Pumo4g01406 726 Pfam Tetratricopeptide repeat 442 517 - -
Pumo4g01406 726 Pfam Tetratricopeptide repeat 612 677 - -
Pumo4g01406 726 SUPERFAMILY TPR-like 571 710 IPR011990 GO:0005515
Pumo4g01406 726 ProSiteProfiles TPR repeat profile. 443 476 IPR019734 GO:0005515
Pumo4g01406 726 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 41 724 - -
Pumo4g01406 726 SUPERFAMILY TPR-like 439 558 IPR011990 GO:0005515
Pumo4g01406 726 MobiDBLite consensus disorder prediction 84 120 - -
Pumo4g01406 726 Gene3D Tetratricopeptide repeat domain 604 716 IPR011990 GO:0005515
Pumo4g01406 726 Gene3D Tetratricopeptide repeat domain 426 603 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01406 Pumo-Chr4 17840892 17843761 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01406 - - gmx:100813461 1157.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01406 4 17840892 17843761 Pumo10g02041 10 27263070 27267298 ECH
Pumo4g01406 4 17840892 17843761 Pumo4g01406 4 17840892 17843761 ECH
Pumo4g01406 4 17840892 17843761 Pumo10g02041 10 27263070 27267298 PCT