Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02041 ATGAAAGAATTGAATATGCCGGGAATTGTTACAAACGGGGTTCATGATGAAGGGGGAAGCAATGAGATGAATGGGGACCATGATTCCTCCTCTAAGGAAACCTTAAATCTGGTTAAGTCCCCGAGGGGCGGTTCCGTGAGTCCGCGAGGAGGCCAGGGTGATGATGGTGCTAATTTAGGGGGTGATGGGGTGGTTGAGCCCTCCATTGAACAGCTTTATGAGAATGTGTGTGACATGCAGAGTTCAGATCAGTCGCCGTCGAGGCAAAGTTTTGGATCTGATGGTGACGAGTCTAGAATTGATTCGGAGTTGAGGCATCTAGTTGGAGGACGGATGAGGGAGGTTGAGATAATGGAAGAGGAAGTGGGGGAGGGGAAAGGGCCAGAAGGGAGTTCAAGTAGTGAAATATCTTCTGCATTGGGTGGCTTGTCCAATGATAAGAAGGTAGATCAGGTGGATGAGATTCAGGAGGTTCAGCCTGCAGCTACTAGTTCTGGTTCCTCAGAAAAATCTGTCAAAGCATCGAATTCACCGGTGGGACCTGATACTTCGCCCAAATCGACATCCAAGGGAAAAAGTCCTCTTTCAAAAGCTCCTATTCCGAGAAAGAATGGTAAGCCTTTGAGGAAACAGACTAGTGGAGTTACTGGCGTGAAGAATACGAGGAATTCTCCTTTGGGTAAGACAGTGTCACGAAACCGAGCTGAGAGTACAGCTGAGTCAGCATTAGAAAGACCTGAGCGGGCACCGGTATTGCTGAAGCAAGCAAGAGATCTGATTTCATCAGGAGATAATCCGCATAAGGCTCTTGACTTAGCTCTTCAAGCAATGAAACTGTTTGAGAAGTTTGGTAATGGGAAACCAAGTTTGGAGCTGGTTATGTGTTTACATGTTACAGCAGCAATATATTGCAGCTTGGGTCAATATGATGAGGCAATTCCGATTCTTGAGCGCTCAATTGAGATTCCTGCTATTGAGGAGAGTCAACAACATGCCCTTGCCAAATTTGCCGGTCACATGCAACTGGGAGACACCTATGCTATGCTGGGCCAGCTTGAGAATTCAATAATGTGCTACACCACTGGGTTAGAAGTCCAGAAGCAGGTTTTGGGAGAGACAGACCCAAGGGTTGGTGAAACTTGTCGGTACGTGGCTGAAGCTAATGTTCAAGCTTTGCAATTTGATGAAGCAGAGAGGCTGTGTCAAATGGCTCTTGACATTCATAAAGCAAATGATTCAGCTCCATCTCTCGAAGAGGCAGCTGATAGGAGGCTCATGGGCCTTATATGCGATACAAAGGGAAATCATGAAACAGCTCTTGAGCATCTTGTTTTAGCCAGCATGGCAATGGTAAATAACGGCCAGGAAACAGAAGTGGCATCTGTTGACTGCAGCATTGGAGACACATACTTATCCTTGTCTCGATATGATGAGGCTGTCTTTGCATATCAGAAAGCGCTAACAGTTTTCAAGACCAGCAAAGGAGAGAATCATCCAGCAGTGGGATTAGTCTTTGTACGTTTGGCCGACTTGTATAACAGGACAGGGAAGATAAGGGAATCAAAATCATATTGCGAGAGTGCACTTAAAATATATGAGAATCCAATGCCTGGAGTTCCTCCGGAGGAGATTGCCAGTGGTCTTACGAATATCTCAACTATCTATGAGTCAATGAATGAGCTTGAACAGGCACTCAAGTTATTGCAGAAAGCACTTGAGATATATAATGATACCCCTGGTCAGCAAAGCACAATAGCTGGAATTGAAGCTCAGATGGGAGTCATGTACTACATGATGGGGAACTATTCTGAATCTTACAACACTCTGAAGAATGCTATTTCAAAGCTTCGTGCTATTGGAGAAAAGAAATCATCCTTCTTTGGTATTGCTCTTAATCAAATGGGACTTGCCTGTGTGCAGCGCTATGCCTTAAGTGAGGCTACAGAATTATTTGAAGAAGCAAAGAGTATTTTGGAACAAGAATATGGACCGTATCACCCAGAAACACTTGGGGTATATAGTAATCTTGCTGGCACGTATGACGCAATTGGCAGGCTGGATGATGCAATTCAAATTCTGGAGTACGTTGTTAGCGCGAGGGAGGAAAAGCTAGGGACAGCAAATCCTGAAGTGGATGATGAGAAGAGAAGGTTGGCTGAATTGTTGAAGGAAGCAGGTAGAGTTCGGAGCAGAAAAGCCAGGTCACTTGAGAACCTTCTTGATAGCAATGCTCATGCTGCAAACAACGTTGTCATCAGGGCCTGA 2265 0.4525 MKELNMPGIVTNGVHDEGGSNEMNGDHDSSSKETLNLVKSPRGGSVSPRGGQGDDGANLGGDGVVEPSIEQLYENVCDMQSSDQSPSRQSFGSDGDESRIDSELRHLVGGRMREVEIMEEEVGEGKGPEGSSSSEISSALGGLSNDKKVDQVDEIQEVQPAATSSGSSEKSVKASNSPVGPDTSPKSTSKGKSPLSKAPIPRKNGKPLRKQTSGVTGVKNTRNSPLGKTVSRNRAESTAESALERPERAPVLLKQARDLISSGDNPHKALDLALQAMKLFEKFGNGKPSLELVMCLHVTAAIYCSLGQYDEAIPILERSIEIPAIEESQQHALAKFAGHMQLGDTYAMLGQLENSIMCYTTGLEVQKQVLGETDPRVGETCRYVAEANVQALQFDEAERLCQMALDIHKANDSAPSLEEAADRRLMGLICDTKGNHETALEHLVLASMAMVNNGQETEVASVDCSIGDTYLSLSRYDEAVFAYQKALTVFKTSKGENHPAVGLVFVRLADLYNRTGKIRESKSYCESALKIYENPMPGVPPEEIASGLTNISTIYESMNELEQALKLLQKALEIYNDTPGQQSTIAGIEAQMGVMYYMMGNYSESYNTLKNAISKLRAIGEKKSSFFGIALNQMGLACVQRYALSEATELFEEAKSILEQEYGPYHPETLGVYSNLAGTYDAIGRLDDAIQILEYVVSAREEKLGTANPEVDDEKRRLAELLKEAGRVRSRKARSLENLLDSNAHAANNVVIRA 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02041 754 Coils Coil 551 578 - -
Pumo10g02041 754 Gene3D Tetratricopeptide repeat domain 621 739 IPR011990 GO:0005515
Pumo10g02041 754 Gene3D Tetratricopeptide repeat domain 444 620 IPR011990 GO:0005515
Pumo10g02041 754 SUPERFAMILY TPR-like 293 441 IPR011990 GO:0005515
Pumo10g02041 754 MobiDBLite consensus disorder prediction 209 237 - -
Pumo10g02041 754 Gene3D Tetratricopeptide repeat domain 232 439 IPR011990 GO:0005515
Pumo10g02041 754 Pfam Tetratricopeptide repeat 629 697 - -
Pumo10g02041 754 Pfam Tetratricopeptide repeat 459 534 - -
Pumo10g02041 754 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 57 744 - -
Pumo10g02041 754 MobiDBLite consensus disorder prediction 74 93 - -
Pumo10g02041 754 MobiDBLite consensus disorder prediction 1 248 - -
Pumo10g02041 754 Pfam Tetratricopeptide repeat 300 322 IPR019734 GO:0005515
Pumo10g02041 754 Coils Coil 711 731 - -
Pumo10g02041 754 ProSiteProfiles TPR repeat profile. 545 578 IPR019734 GO:0005515
Pumo10g02041 754 MobiDBLite consensus disorder prediction 94 126 - -
Pumo10g02041 754 SMART tpr_5 586 619 IPR019734 GO:0005515
Pumo10g02041 754 SMART tpr_5 420 453 IPR019734 GO:0005515
Pumo10g02041 754 SMART tpr_5 460 493 IPR019734 GO:0005515
Pumo10g02041 754 SMART tpr_5 378 411 IPR019734 GO:0005515
Pumo10g02041 754 SMART tpr_5 502 535 IPR019734 GO:0005515
Pumo10g02041 754 SMART tpr_5 628 661 IPR019734 GO:0005515
Pumo10g02041 754 SMART tpr_5 545 578 IPR019734 GO:0005515
Pumo10g02041 754 SMART tpr_5 336 369 IPR019734 GO:0005515
Pumo10g02041 754 SMART tpr_5 293 326 IPR019734 GO:0005515
Pumo10g02041 754 SMART tpr_5 670 703 IPR019734 GO:0005515
Pumo10g02041 754 Pfam Tetratricopeptide repeat 545 577 - -
Pumo10g02041 754 ProSiteProfiles TPR repeat profile. 460 493 IPR019734 GO:0005515
Pumo10g02041 754 SUPERFAMILY TPR-like 464 698 IPR011990 GO:0005515
Pumo10g02041 754 MobiDBLite consensus disorder prediction 157 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02041 Pumo-Chr10 27263070 27267298 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02041 - - gmx:100783201 1258.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01406 4 17840892 17843761 Pumo10g02041 10 27263070 27267298 ECH
Pumo10g02041 10 27263070 27267298 Pumo10g02041 10 27263070 27267298 ECH
Pumo4g01406 4 17840892 17843761 Pumo10g02041 10 27263070 27267298 PCT