Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01367 ATGGAACATAGCAGATCCTTCAACGACTCCAACAATAGCCTCTCTTCACAACGCAGCCTCGCCTCGGTTCCTTCCCTCAACTCACACTCTCACCTCTTCACTCCTTCCACCACCTCCCACACCTGCCTCACCACTCTCAAATCCCACACCTCCTCCTACATCTCTTCCCTCACCCTCGCCGGCAAGTTCCTCTACGCAGGCTCCTCCGACAGAGAAATCAGATCCTGGAACCACACCCATTTATTCATCCACTCCCAACAAAATCAACCACAACCAACTAACAACGTTATAATAGCAGGAAAAGGTGCTGTTAAGTCCATAGTGGTTCACTCCGACAAACTCTTCACTGCTCACCAAGACAACAAAATCCGCGTCTGGAAAATCACCAGCCTCGAACACGACCAGCAGAAGTATACACGTGTGGCCACGCTCCCCACGTTCGGCGACCGCGTGACCAAAGTCTTGATCCCCAAGAACCACGTGCAGATTCGCCGCCACAAAAAGTGCACCTGGGTTCACCACGTCGACACCGTCTCCTCCCTCGCCCTGTCCAATGACGGAACCTTCCTGTACTCCGTCTCGTGGGACAGGACAATTAAGGTTTGGCGAACGAAAGACTTCGCGTGCTTGGAGTCCGTGCGCGACGCGCACGACGACGCCATAAACGCGGTCGCGGTTTCTTACGATGGGCACGTCTACACCGGATCCGCGGACAAGAGAATCAAGGTATGGAAAAAATTCCAAGGGGAGAAGAAACACTCGCTTGTGGACACGTTGGAGAAACACAACTCTGGGATTAACGCGTTGGCGCTTAGCGGCGATGGCTCTGTGCTGTATTCTGGTGCATGCGATAGGTCAATATTGGTTTCTGAGAAGGGTGAAAATGGTAAATTGTTAGTGGTTGGTGCGCTTAGGGGGCACACTAGGTCGATTTTGTGCTTGGCGGTGGTTTCGGATTTGGTTTGTAGTGGTTCGGAGGACAAAACGGTGCGTATTTGGAGAGGGATTCAGAAGGAGTATTCGTGTTTAGCTGTATTGGAAGGGCATAGGAGTCCGATTAAGAGCTTAACTGCAGCGGTTGATCGTAGTGAAGACCCTTCGGAAGCATCTTTTCTTGTCTATAGTGGCAGTTTGGACTGTGATGTTAAGGTTTGGCAGGTTTTTGTTCCTGTTCTTTCAACTTAA 1185 0.5105 MEHSRSFNDSNNSLSSQRSLASVPSLNSHSHLFTPSTTSHTCLTTLKSHTSSYISSLTLAGKFLYAGSSDREIRSWNHTHLFIHSQQNQPQPTNNVIIAGKGAVKSIVVHSDKLFTAHQDNKIRVWKITSLEHDQQKYTRVATLPTFGDRVTKVLIPKNHVQIRRHKKCTWVHHVDTVSSLALSNDGTFLYSVSWDRTIKVWRTKDFACLESVRDAHDDAINAVAVSYDGHVYTGSADKRIKVWKKFQGEKKHSLVDTLEKHNSGINALALSGDGSVLYSGACDRSILVSEKGENGKLLVVGALRGHTRSILCLAVVSDLVCSGSEDKTVRIWRGIQKEYSCLAVLEGHRSPIKSLTAAVDRSEDPSEASFLVYSGSLDCDVKVWQVFVPVLST 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01367 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 333 IPR001680 GO:0005515
Pumo4g01367 394 MobiDBLite consensus disorder prediction 1 20 - -
Pumo4g01367 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 304 333 - -
Pumo4g01367 394 PRINTS G protein beta WD-40 repeat signature 232 246 IPR020472 -
Pumo4g01367 394 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Pumo4g01367 394 PRINTS G protein beta WD-40 repeat signature 321 335 IPR020472 -
Pumo4g01367 394 Gene3D - 159 389 IPR015943 GO:0005515
Pumo4g01367 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 254 IPR001680 GO:0005515
Pumo4g01367 394 SMART WD40_4 339 386 IPR001680 GO:0005515
Pumo4g01367 394 SMART WD40_4 297 334 IPR001680 GO:0005515
Pumo4g01367 394 SMART WD40_4 206 245 IPR001680 GO:0005515
Pumo4g01367 394 SMART WD40_4 39 77 IPR001680 GO:0005515
Pumo4g01367 394 SMART WD40_4 90 127 IPR001680 GO:0005515
Pumo4g01367 394 SMART WD40_4 252 291 IPR001680 GO:0005515
Pumo4g01367 394 SMART WD40_4 164 203 IPR001680 GO:0005515
Pumo4g01367 394 ProSiteProfiles Trp-Asp (WD) repeats profile. 171 212 IPR001680 GO:0005515
Pumo4g01367 394 SUPERFAMILY WD40 repeat-like 38 387 IPR036322 GO:0005515
Pumo4g01367 394 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 171 202 - -
Pumo4g01367 394 Pfam WD domain, G-beta repeat 341 385 IPR001680 GO:0005515
Pumo4g01367 394 Pfam WD domain, G-beta repeat 172 202 IPR001680 GO:0005515
Pumo4g01367 394 Pfam WD domain, G-beta repeat 41 77 IPR001680 GO:0005515
Pumo4g01367 394 Pfam WD domain, G-beta repeat 256 288 IPR001680 GO:0005515
Pumo4g01367 394 Pfam WD domain, G-beta repeat 210 245 IPR001680 GO:0005515
Pumo4g01367 394 Pfam WD domain, G-beta repeat 302 333 IPR001680 GO:0005515
Pumo4g01367 394 CDD WD40 42 386 - -
Pumo4g01367 394 FunFam BnaA09g28200D protein 161 249 - -
Pumo4g01367 394 Gene3D - 2 158 IPR015943 GO:0005515
Pumo4g01367 394 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 10 387 IPR045182 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01367 Pumo-Chr4 17306719 17308365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01367 216 386 Acyl Lipid Metabolism Gene Families AT3G18860 27.374 9.18e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01367 - - gmx:100801906 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01367 4 17306719 17308365 Pumo10g02080 10 28067816 28074482 ECH
Pumo4g01367 4 17306719 17308365 Pumo4g01367 4 17306719 17308365 ECH
Pumo4g01367 4 17306719 17308365 Pumo10g02080 10 28067816 28074482 PCT