Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02080 ATGGGGTCCACAGCACTAAGAGGCGTGAATGCTTATGAACCAATGGTTAGTCCAACTTGCATGGTGGTTATACCAATGCAACGGCCACTTTCTTCGACTCCAGCGTCTCTTCCTCTTCTCACTTCCAACCACCATCAACCATGGTCAACACCATCCCTCACTTCACAACGCAGCCTCGTCTCAGTTCCCTCCCTCAACCATCGCCACACCCCTAATTCCACCACAACCTACCACCACTGCCTCACAACCCTCAAAGGCCACACCTCCTACATCTCCTCCCTAACCGTCTCCGGCAAATTCCTCTACACCGGCTCCTCCGACAGCGAAATCTGGTCCTGGAACCGCATCCCAGAAAACTCATCCACCAACAACACTGTCCTTGCCGGAAACGGCGCCGTTAAGTCCTTGGTAATCCAATCCAACAAACTCTTCAGCGCGCACCAGGACCACAAAATCCGCGTCTGGAAAATTAGCAGTAGCAACAACAACGATCAGGAACACAACCACGACCAGCAGAAATACACACACGTGGCCACACTTCCCACCCTGGGCGACCGCGCCTCCAAGGTCTTAATCCCCAAGAACCACGTCCAAATCCGAAGGCACAAGAAATGCACGTGGGTCCACCACGTGGACACCGTCTCCGCCCTCGCCTTATCCAAAGACGGAACCTTTCTGTACTCCGTCTCTTGGGACAGAACACTCAAAATCTGGCGAACCAAAGACTTCACCTGCCTGGAGTCCCTCACCAATGCCCACGACGACGCCATCAACGCCGTCGCAGTTTCCCACGATGGACGCGTCTACACCGGATCAGCAGACAAAAAAATCAAGGTGTGGAAAAAATCATCAGGAGAAAAAACACACACCTTGGTAGAGACTCTGGAGAAGCACAATTCTGGGGTAAATGCCCTGGCTCTAAGCAGCGACGAAACTGTTCTATATTCCGGTGCATGCGATAGGTCTATTTTGGTCTGGGAGAAAGAGGATGGTGGGAAAATGGGGGTGGTGGGTGCGTTGAGGGGACACACTAAGTCTATACTGTGTTTGGCTGTGGTGGCGGAGTTGGTGTGCAGTGGCTCTGCGGATAAAACGATTAGAATTTGGAGAGGTGTTGATGCAACAACGTACTCTTGCTTAGCGGTTCTGGAAGGGCACACGGGTTCGATCAAGTGCTTAACCGCAGTGGTTGACCACTGTAACAACACATCGCAGTCCGAAGCATCTTTTCTAGTCTATAGTGGCGGTTTGGACTGCGACATTAAGGTTTGGCAGATTTTAGTTCCTGCTGTCTAA 1296 0.5185 MGSTALRGVNAYEPMVSPTCMVVIPMQRPLSSTPASLPLLTSNHHQPWSTPSLTSQRSLVSVPSLNHRHTPNSTTTYHHCLTTLKGHTSYISSLTVSGKFLYTGSSDSEIWSWNRIPENSSTNNTVLAGNGAVKSLVIQSNKLFSAHQDHKIRVWKISSSNNNDQEHNHDQQKYTHVATLPTLGDRASKVLIPKNHVQIRRHKKCTWVHHVDTVSALALSKDGTFLYSVSWDRTLKIWRTKDFTCLESLTNAHDDAINAVAVSHDGRVYTGSADKKIKVWKKSSGEKTHTLVETLEKHNSGVNALALSSDETVLYSGACDRSILVWEKEDGGKMGVVGALRGHTKSILCLAVVAELVCSGSADKTIRIWRGVDATTYSCLAVLEGHTGSIKCLTAVVDHCNNTSQSEASFLVYSGGLDCDIKVWQILVPAV 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02080 431 ProSiteProfiles Trp-Asp (WD) repeats profile. 250 290 IPR001680 GO:0005515
Pumo10g02080 431 Gene3D - 64 191 IPR015943 GO:0005515
Pumo10g02080 431 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 340 369 - -
Pumo10g02080 431 ProSiteProfiles Trp-Asp (WD) repeats profile. 84 114 IPR001680 GO:0005515
Pumo10g02080 431 SUPERFAMILY WD40 repeat-like 80 426 IPR036322 GO:0005515
Pumo10g02080 431 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 336 IPR001680 GO:0005515
Pumo10g02080 431 Gene3D - 196 429 IPR015943 GO:0005515
Pumo10g02080 431 SMART WD40_4 119 156 IPR001680 GO:0005515
Pumo10g02080 431 SMART WD40_4 376 425 IPR001680 GO:0005515
Pumo10g02080 431 SMART WD40_4 77 114 IPR001680 GO:0005515
Pumo10g02080 431 SMART WD40_4 200 239 IPR001680 GO:0005515
Pumo10g02080 431 SMART WD40_4 242 281 IPR001680 GO:0005515
Pumo10g02080 431 SMART WD40_4 288 327 IPR001680 GO:0005515
Pumo10g02080 431 SMART WD40_4 333 370 IPR001680 GO:0005515
Pumo10g02080 431 ProSiteProfiles Trp-Asp (WD) repeats profile. 340 369 IPR001680 GO:0005515
Pumo10g02080 431 FunFam BnaA09g28200D protein 197 285 - -
Pumo10g02080 431 Pfam WD domain, G-beta repeat 292 326 IPR001680 GO:0005515
Pumo10g02080 431 Pfam WD domain, G-beta repeat 208 238 IPR001680 GO:0005515
Pumo10g02080 431 Pfam WD domain, G-beta repeat 80 114 IPR001680 GO:0005515
Pumo10g02080 431 Pfam WD domain, G-beta repeat 244 281 IPR001680 GO:0005515
Pumo10g02080 431 Pfam WD domain, G-beta repeat 378 424 IPR001680 GO:0005515
Pumo10g02080 431 Pfam WD domain, G-beta repeat 338 369 IPR001680 GO:0005515
Pumo10g02080 431 CDD WD40 80 425 - -
Pumo10g02080 431 ProSiteProfiles Trp-Asp (WD) repeats profile. 207 248 IPR001680 GO:0005515
Pumo10g02080 431 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 207 238 - -
Pumo10g02080 431 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 37 426 IPR045182 -
Pumo10g02080 431 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 295 327 - -
Pumo10g02080 431 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 250 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02080 Pumo-Chr10 28067816 28074482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02080 234 426 Miscellaneous Gene Families AT5G08390 25.628 2.69e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02080 - - gmx:100815608 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01367 4 17306719 17308365 Pumo10g02080 10 28067816 28074482 ECH
Pumo10g02080 10 28067816 28074482 Pumo10g02080 10 28067816 28074482 ECH
Pumo4g01367 4 17306719 17308365 Pumo10g02080 10 28067816 28074482 PCT