Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01343 ATGAAAAGAGGAGGGAGAACAGGCAAGTTCGACACTCTCGTCGCATTGACCAGACAACGATCCATTCACATTCTCATCGCCATCGCGCTCTTCTACGTCCTCTTCTTCACCCTCGAAATCCCCCTCGTCTTCAGATTCGCCCAGGAACAACCCACTCGGACCCGTCGACAACTCGTTCGCCGCCAAAACGGCGTCGTCTCCGGCTTGATCCTAAACGACGCCGCATTCGATTCGGAGCTCTACCAGTCCGCGTGCCGCGCGGGGAAGGCAGTCTGGGAGGAACTAAAATCATCACGGAACCCGCGGGGCCTCGTTCCGAAGCCCGATAACCGATCCGGGCCCTGCCCGGGGTCCGTTTCGGTGTCCGGGCCCGAGTTTTTGGGCCGCGGGAGTGTCATGGTGATTCCGTGTGGGCTCACGTTGGGGTCCCACGTAACGGTGGTTGCGAAGCCGTTAAGGGCGCAACGGAAGACGTGTCAGTTCGTGATGGAGTTGCAGGGGCTGAAGACGGTGGAGGGTGAGGAACCACCTAGGGTGCTGCATTTCAATCCTAGGTTAAAAGGGGATTGGAGCAGAAAGCCTGTCATTGAACTTAACACGTGTTATCGCATGCATTGGGGTACTGCATTGCGCTGTGATGGTTGGAAATCCAGAGCTGGTGAAGATACTGTTGATGGGTTGGTGAAGTGTGAGAAGTGGATTGGGGGTGATGATGATGATAGGCTTGCAGTGGAGACCAAGGCGGAGTGGTGGTTGAAGAGATTGATAGGGCGGACAAAACGAGTAACAGTTGATTGGCCATTTCCATTTTCTGAGAACAAGCTATTTGTTCTTACTCTTAGTGCTGGGTTGGAGGGTTACCATATTAACGTTGATGGGAGGCATGTCACCTCTTTTCCTTATCGCACTGGGTTTACTCTTGAGGATGCCACTGGTCTTACTTTGAGTGGGGACATTGATGTCCATTCTGTATTTGCTGCCTCTTTGCCTTCGGTGCATCCCAATGTTTCGCCTGCAGCAGCATCTTGA 1029 0.5364 MKRGGRTGKFDTLVALTRQRSIHILIAIALFYVLFFTLEIPLVFRFAQEQPTRTRRQLVRRQNGVVSGLILNDAAFDSELYQSACRAGKAVWEELKSSRNPRGLVPKPDNRSGPCPGSVSVSGPEFLGRGSVMVIPCGLTLGSHVTVVAKPLRAQRKTCQFVMELQGLKTVEGEEPPRVLHFNPRLKGDWSRKPVIELNTCYRMHWGTALRCDGWKSRAGEDTVDGLVKCEKWIGGDDDDRLAVETKAEWWLKRLIGRTKRVTVDWPFPFSENKLFVLTLSAGLEGYHINVDGRHVTSFPYRTGFTLEDATGLTLSGDIDVHSVFAASLPSVHPNVSPAAAS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01343 342 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 131 327 IPR001079 GO:0030246
Pumo4g01343 342 Gene3D - 250 325 - -
Pumo4g01343 342 SMART Gal_bind_lectin_2 135 326 IPR001079 GO:0030246
Pumo4g01343 342 CDD GLECT 135 325 IPR001079 GO:0030246
Pumo4g01343 342 FunFam Hydroxyproline O-galactosyltransferase GALT2 242 325 - -
Pumo4g01343 342 FunFam Hydroxyproline O-galactosyltransferase GALT6 131 224 - -
Pumo4g01343 342 PANTHER GALECTIN 133 325 IPR044156 -
Pumo4g01343 342 Gene3D - 131 224 - -
Pumo4g01343 342 Pfam Galactoside-binding lectin 132 325 IPR001079 GO:0030246
Pumo4g01343 342 SUPERFAMILY Concanavalin A-like lectins/glucanases 133 325 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01343 Pumo-Chr4 17061373 17063144 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01343 6 338 Glycosyltransferase AT1G74800 51.768 4.64e-128 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01343 K20843 - gmx:100800292 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01343 4 17061373 17063144 Pumo4g01343 4 17061373 17063144 ECH
Pumo4g01343 4 17061373 17063144 Pumo10g02106 10 28413237 28417033 PCT