Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02106 ATGAAGCGAAAGCTAGAAACCTTGGTGTGGTTAACACGAAAACGATCGATTCAGTTTCTAATCGGCGTGTCGTTTTTGTACCTCGTACTGGTGACACTCGAAATCCCCATTGTTTTCAAAACCGACTTCGCCGCCGTCGCCACCACGCGCCCTCCGAGGCTTCTGAGCGAGGAGGACTCGCAGCAGAAGGAGTCTCCAGCGCGTCCTCCGAAAACGGTCTCCAACGCCGACTCGCCGAGTCAACTCGCCCGCCGCAGCAGCAGCGTCGTTTCCGCGTTGGTCCTAAACGACGCCGCGTTTGACTCCAACGGCAACGACCAGCTCTACATGCAAGTGAAGCACGCGCGCGAGGTGGGACGGAGCCTCTGGGAGGACCTCGAATCTGGAAGGCCGCGAACCCGAACCGTTCGGGCCGAGAACCGGTCCGGTTCGTGTCCCGGTTCGGTGTCCCTCTCCGGTTCGGACGTCTCGGGCGTGGTGCCGCTGCCGTGCGGGCTCACATTGGGGTCCCACATAACGGTCGTTGGGAAGCCGTTGGCTGCGAGGCCGGATTTCGAGCCGAAGATAACGGTGGTGACGGAGGATGAGCCCGTGATGGTGTCGCAGTTCGTGGTGGAGTTGCAAGGTTTGAAAACTGTTGACGGTGAAGAGCCTCCTAGGGTTTTTCACTTCAACCCGAGGTTGAAGGGGGATTGGAGTGGGAAACCTGTGATCGAACTCAATACCTGTTACCGCATGCAGTGGGGTTCAGCTCTTAGATGTGACGGTTGGAAATCCAAGGCCGATGAAGATACCGTTGATAGGATGGTGAAGTGTGAGAAGTGGATTCGGGACGATGAAAATCACTTAGAGGGGTCTAAGGCGACGTGGTGGTTGAATAGACTGATAGGGCGCACGAAGAAAGTAACTGTTGACTGGCCATTCCCGTTTTCTGAGGGGAAGCTATTTGTTCTTACTATTAGTGCTGGGTTGGAGGGGTATCATGTTTCGGTTGATGGGAGGCATGTGACCTCTTTTCCTTATCGCACTGGTTTTACTCTTGAGGATGCCACCGGGCTTTCGTTGACTGGAGACATTGATGTCCACTCTGTATTTGCAGCATCTTTGCCTTCATCGCATCCCAGTTTTGCCCCGCAGCGGCATCTTGAATTTTCCACCAGGTGGCGTGCTCTGCCACTTCCTGACTCTGGCGTAGAATTGTTCATTGGTGTCCTCTCGGCTGGAAACCATTTTGCTGAGCGGATGGCTGTGAGGAAGTCATGGATGCAGCATAGGCTCATCAAATCTGGAGCAGTGGTTGCACGTTTCTTTGTGGCACTGCATGCAAGACAAGAAATTAATGCAGAGTTGAAAAAGGAAGCAGAATATTTTGGTGATATTGTTATAGTGCCTTACTTGGATAACTATGACCTTGTTGTGTTGAAAACAGTAGCCATATGTGAATATGGGGTACATACAGTTTCTGCTAAGTATGTCATGAAAGGTGATGATGACACTTTTGTTAGAGTGGATGCCGTTATTGATGAAGCAAGGAAGGTTCCAGATGGTACGAGCTTTTATATTGGTAATATAAATTACTACCACAAACCCTTGCGCTATGGGAAATGGGCAGTGACATATGAAGAGTGGCCAGAAGAGGATTACCCACCCTATGCTAATGGGCCGGGTTATATTTTGTCATCAGACATCGCACACTACGTTGTATCTGAATTTGAAATGCATAAATTAAGGTTGTTTAAGATGGAAGATGTGAGTATGGGAATGTGGGTGGAGCAATTCAACAGCACAAAACCAGTACACTACTCTCATAGCTTGCAGTTCTGCCAATTTGGTTGCATAGAAGACTATTACACTGCCCATTACCAATCACCTAGGCAGATGATGTGCCTGTGGGATAAACTGCAGAGGAATTCAAGGCCTCAATGCTGCAACATGAGATGA 1941 0.5028 MKRKLETLVWLTRKRSIQFLIGVSFLYLVLVTLEIPIVFKTDFAAVATTRPPRLLSEEDSQQKESPARPPKTVSNADSPSQLARRSSSVVSALVLNDAAFDSNGNDQLYMQVKHAREVGRSLWEDLESGRPRTRTVRAENRSGSCPGSVSLSGSDVSGVVPLPCGLTLGSHITVVGKPLAARPDFEPKITVVTEDEPVMVSQFVVELQGLKTVDGEEPPRVFHFNPRLKGDWSGKPVIELNTCYRMQWGSALRCDGWKSKADEDTVDRMVKCEKWIRDDENHLEGSKATWWLNRLIGRTKKVTVDWPFPFSEGKLFVLTISAGLEGYHVSVDGRHVTSFPYRTGFTLEDATGLSLTGDIDVHSVFAASLPSSHPSFAPQRHLEFSTRWRALPLPDSGVELFIGVLSAGNHFAERMAVRKSWMQHRLIKSGAVVARFFVALHARQEINAELKKEAEYFGDIVIVPYLDNYDLVVLKTVAICEYGVHTVSAKYVMKGDDDTFVRVDAVIDEARKVPDGTSFYIGNINYYHKPLRYGKWAVTYEEWPEEDYPPYANGPGYILSSDIAHYVVSEFEMHKLRLFKMEDVSMGMWVEQFNSTKPVHYSHSLQFCQFGCIEDYYTAHYQSPRQMMCLWDKLQRNSRPQCCNMR 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02106 646 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 158 367 IPR001079 GO:0030246
Pumo10g02106 646 SMART galectin_3 156 367 IPR001079 GO:0030246
Pumo10g02106 646 SMART Gal_bind_lectin_2 162 366 IPR001079 GO:0030246
Pumo10g02106 646 MobiDBLite consensus disorder prediction 54 83 - -
Pumo10g02106 646 Gene3D - 279 365 - -
Pumo10g02106 646 MobiDBLite consensus disorder prediction 66 83 - -
Pumo10g02106 646 Pfam Galactoside-binding lectin 160 365 IPR001079 GO:0030246
Pumo10g02106 646 Gene3D - 150 274 - -
Pumo10g02106 646 Pfam Galactosyltransferase 413 593 IPR002659 GO:0006486|GO:0016020|GO:0016758
Pumo10g02106 646 CDD GLECT 159 365 IPR001079 GO:0030246
Pumo10g02106 646 FunFam Hydroxyproline O-galactosyltransferase GALT2 281 365 - -
Pumo10g02106 646 SUPERFAMILY Concanavalin A-like lectins/glucanases 159 365 IPR013320 -
Pumo10g02106 646 FunFam Hydroxyproline O-galactosyltransferase 391 634 - -
Pumo10g02106 646 Gene3D - 396 642 - -
Pumo10g02106 646 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 336 596 IPR002659 GO:0006486|GO:0016020|GO:0016758
Pumo10g02106 646 FunFam Hydroxyproline O-galactosyltransferase GALT4 157 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02106 Pumo-Chr10 28413237 28417033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02106 4 646 Glycosyltransferase AT1G74800 63.418 0.0 874
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02106 K20843 - gmx:100795908 1213.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02106 10 28413237 28417033 Pumo10g02106 10 28413237 28417033 ECH
Pumo4g01343 4 17061373 17063144 Pumo10g02106 10 28413237 28417033 PCT