Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01213 ATGAGGTGGGAAAAGGTTGAGGTGAAGGCGATAGGCACAGAGGGTGGAGGTGGGAATGAGGTGTATGGGCCAGGGAAGAGGTGGGGTCACACCTGCAACGCCGTCAAAGGTGGCAGACTTGTCTATGTCTTCGGTGGTTACGGCAAAGATAACTGTCAGACCAACCAAGTTCATGTCTTCGACACTGTGAAGCAGACATGGAGCCAACCCGCTCTCAAAGGCTCCCCACCTACTCCTAGGGACAGCCATACATGCACAGCCATTGGTGATAATCTGTTTGTGTTTGGGGGTACAGATGGGATGAACCCTCTCAAGGATTTGCACATATTAGACACTTCTTTGCAAACATGGGTTTCTCCAACCATAAGAGGAGAAGGGCCACCTGCACGTGAGGGTCATAGTGCAGCAGTTGTTGGCAAACGGCTATTCATCTTTGGTGGTTGTGGAAAATCTGCAGATAATAATAATGAGCTCTACTACAATGATCTTTACATATTAAATACAGAGACGTTTGTTTGGAAGTGTGCTACAACATCAGGCACTCCACCATCTCCTCGTGATAGCCACAGTTGTTCATCTTGGAAAAACAAAATTATTGTGATAGGGGGTGAAGATGGGCATGATTATTATTTGTCTGATGTCCATATCCTTGATACTGATACTCTAATTTGGAGGGAGCTGAATACATCAGGCCAATTGTTGCCACCTCGAGCTGGTCATTCCACTGTTTCTTTTGGCAAGAACTTGTTTGTTTTTGGTGGATTTACAGATGCCCAAAATCTCTATAATGACCTTTATATGCTCGATATTGATACTGGTGTTTGGACAAATGTTACAACTGCAACCAATGGTCCTTCTGCTAGATTTTCTGTGGCTGGTGACTGTTTAGACCCTTTTAAGGGTGGTGTTCTTATATTCATCGGTGGTTGTAATAAAAGTCTTGAGGCCCTGGATGATATGTATTACCTATATACAGGAATTGCTCGGGAAAGTGAACAGAGACCAGAAAAGTTATCTTTAAGGAAGCAATTAAAACTGAAATGCCAAGAACAAAATCCCAATCCTAGCCAAAATCAAGTTCTAGTTAGATATGGAGTGGGTTCTGATGTGGGCCAGATCATGACAGTGTTGAATTATAGCCAGCCAAGTAGACTAAATATCCCAGTAAACCAATCCCTACCTCATGGAAAGAAAATGTTTGAAGCCAAGGTCACTGAAAACATCTCAGAAGGATATACTATTGAAACTGTTATTGATGGAAAGCCTCTTCGTGGAATTCTGTTTTTAAACAAGCCAAACTCTCTGTACTCAGCTGCTCATACTTCCAGTAGGAAAAGGACTGTTGGTGAAATTGATAGCGTTGTCTCGAATGGTGTACACCCTAACCAATTAAAGACTCCTAAAGTGCTCAAGCAAAATCAAATGGAAAACCAAAAAGCATCACGTGGAGACAGTTCAGAATCTCATGAACACCGCACTGAATCCATTGCTGTGCTTATGTCAAGTAACCCAATGACTGCCAATGCTTCTGATAACCATAAGGTTTCTGCCAACCCAGAACCAGAAGCTGCTGCTTTGAATCGAAATGATGAAAAACATGAAACACCCAAATCCTTAATTGGAAACTTGAAAAATGATGGAGCAAATGATGTGACAAGTTCCAAAAGTGAGGCACAAACAAATAATCAAACAAATGTGCTAATTTCCAACTTTGAAGTTCCAAGACATGATCAAAAAAGTGATGCTCCAAACTACAACACTGAATTTCTGAAACCTGCTGTAGCTGAGAGTGCTGTGCATCTGTCAAATCAAGTGGTGGATTCCACAACTCCACAACTCCAACTACAAGAGAATGCAGTGAATCAGCAAAATTAA 1875 0.4203 MRWEKVEVKAIGTEGGGGNEVYGPGKRWGHTCNAVKGGRLVYVFGGYGKDNCQTNQVHVFDTVKQTWSQPALKGSPPTPRDSHTCTAIGDNLFVFGGTDGMNPLKDLHILDTSLQTWVSPTIRGEGPPAREGHSAAVVGKRLFIFGGCGKSADNNNELYYNDLYILNTETFVWKCATTSGTPPSPRDSHSCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLIWRELNTSGQLLPPRAGHSTVSFGKNLFVFGGFTDAQNLYNDLYMLDIDTGVWTNVTTATNGPSARFSVAGDCLDPFKGGVLIFIGGCNKSLEALDDMYYLYTGIARESEQRPEKLSLRKQLKLKCQEQNPNPSQNQVLVRYGVGSDVGQIMTVLNYSQPSRLNIPVNQSLPHGKKMFEAKVTENISEGYTIETVIDGKPLRGILFLNKPNSLYSAAHTSSRKRTVGEIDSVVSNGVHPNQLKTPKVLKQNQMENQKASRGDSSESHEHRTESIAVLMSSNPMTANASDNHKVSANPEPEAAALNRNDEKHETPKSLIGNLKNDGANDVTSSKSEAQTNNQTNVLISNFEVPRHDQKSDAPNYNTEFLKPAVAESAVHLSNQVVDSTTPQLQLQENAVNQQN 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01213 624 Gene3D - 2 150 IPR015915 GO:0005515
Pumo4g01213 624 Pfam Kelch motif 127 171 - -
Pumo4g01213 624 Gene3D - 153 400 IPR015915 GO:0005515
Pumo4g01213 624 MobiDBLite consensus disorder prediction 526 563 - -
Pumo4g01213 624 Pfam Galactose oxidase, central domain 236 285 - -
Pumo4g01213 624 Pfam Galactose oxidase, central domain 185 231 - -
Pumo4g01213 624 SMART kelc_smart 197 247 IPR006652 GO:0005515
Pumo4g01213 624 SMART kelc_smart 40 90 IPR006652 GO:0005515
Pumo4g01213 624 SMART kelc_smart 248 294 IPR006652 GO:0005515
Pumo4g01213 624 SMART kelc_smart 91 140 IPR006652 GO:0005515
Pumo4g01213 624 MobiDBLite consensus disorder prediction 454 493 - -
Pumo4g01213 624 SUPERFAMILY Galactose oxidase, central domain 209 317 IPR011043 -
Pumo4g01213 624 MobiDBLite consensus disorder prediction 454 481 - -
Pumo4g01213 624 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5 24 179 - -
Pumo4g01213 624 MobiDBLite consensus disorder prediction 545 563 - -
Pumo4g01213 624 SUPERFAMILY Galactose oxidase, central domain 23 228 IPR011043 -
Pumo4g01213 624 Pfam Galactose oxidase, central domain 39 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01213 Pumo-Chr4 15484227 15491866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01213 54 313 Acyl Lipid Metabolism Gene Families AT3G05420 28.727 1.30e-26 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01213 - - gmx:100803752 1166.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01213 4 15484227 15491866 Pumo4g01213 4 15484227 15491866 ECH
Pumo4g01213 4 15484227 15491866 Pumo10g02249 10 31320292 31327626 PCT