Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g02249 ATGAGGTGGGAAAAGGTGAAGGGAATAGGAGGAGAAGAAGGGCCAGGGAAGAGGTGGGGCCACACGTGTAACGCCGTTAGAGATGGCAGACTTCTTTATCTCTTCGGCGGTTACGGCAAATTTAACTGTCAGACCAACCAAGTTCACGTCTTTGACACTCTGAGGCAGAGCTGGAGTGAACCAGCAATTAAAGGACCCCCACCTACTCCTAGGGACAGCCATAGTTGCACTGTTGTTGGTGATAATCTGTTTGTGTTTGGGGGTACAGATGGGACCAAGCTGCTGAATGATTTGCACATACTAGACACTTCTTCACATACATGGATTTTTCCAACTGTGAGAGGAGAAGCACCAGATGCACGTGAGGGTCATGGTGCAGCACTTGTTGGCAAACGACTATTTGTGTTTGGTGGTTGTGGGAGATCTGCTGATAATATTAATGAGGTGTACTACAATGACCTTTACATATTGAATACAGAATTGTTTGTTTGGAAGTGTGCTACAACATCAGGCACTCCACCATCTCCTCGTGATGGCCATACTTGCTCATCTTGGAGAAACAAAATTATTGTGATAGGTGGTGAAGATGAAAATGATAATTATCTGTATGATGTCCACATCCTAGATACTGATACTCTAATCTGGAGTAAACTGTGTACGTCAGGCCAATCGCTGCCACCTCGAGCCGGTCATTCTACAGTTTCTTTTGGCAAGAACTTGTTTGTTTTTGGGGGCTTTACGGATGCTCAAAGCCTATACAACGACCTGTATATGCTTGACATTGAGACTGGTGTGTGGACTAAGGTGGCAACTACACCTAATGGTCCTTCTGCTAGGTTTTCTGTAGCTGGTGACTGTTTAGACCCATATATGAGTGGTGTTCTTGTGTTTGTTGGTGGTTGTAATAGAAATCTGGAGGCCCTGGATGATATGCATTACCTATACACAGGGATTGCACGGGATAGTGAACAGCGACCAGAGAAGTTATCCTTAAGGAAGCAATTGAAGCTGAAATGTCTAGAACAGAATCCCAATCTTGTCCAAAGCCCAGTTCTGTGTGGATATGGAGCGGGTGCTGACAGTAACCAGCCCATGACAATCTTGAACTATAGCCAACTAAGTAGACTAAATATCCCAGTAAATCAACCCCTCCCTCCTGGAAAGAAAATGTTTCAAGCCAAAGTTAAGGAAAAAAACCCAGCAGGATATACTATCGAAACCGTTATCGATGGAAAGCCTCTTCGTGGAATTCTGTTTATAAACCAGCCAAACACTCTTAATCCAGTTCCTAATACTTCCAGTAGGAAAAGGAATGTCAGTGAAATTTTAAGTGCTGCTTCAAATGGTATACACTCACACAATGTAACGGCTTCTAAAGTGCTCAGGCAGGACAGAATGGAAGATAAACAGGAATTACGGGGAGAGAGTTCAGAATCTCATGAACTCCATAAGGAAGCTGATACTATTGTTGTATCAAGTAACCCGACAACTGCTGCCGAGCCCTTTAAGGTTTCTGTCAACCCAGAACCAGAAGCTGTTTCTTTGAACCAAAATGGTGATGAAAAAAATGACACACCAAGATCCTTAATTGAGAGCTTGAAAAACGATGGATCCAATGATGTGACAAGTTCCAAAGGTGAAGTTCGAATTGGTGGTCAAATAAATGTGCCAGTTTCCAACTATGAAATTCCAAGACAAATGAGTGATGCACCAAACTTTAATGCTGATGTCCTGAAACCTGCAGCAGCTGAGGATGCTGCGTGTCCGCCATATCAAGGTATAACAGGGGACTGCACAACTCCAAGGACAGGACACAGTGAACCAGCAAAATTAACTTGA 1839 0.4361 MRWEKVKGIGGEEGPGKRWGHTCNAVRDGRLLYLFGGYGKFNCQTNQVHVFDTLRQSWSEPAIKGPPPTPRDSHSCTVVGDNLFVFGGTDGTKLLNDLHILDTSSHTWIFPTVRGEAPDAREGHGAALVGKRLFVFGGCGRSADNINEVYYNDLYILNTELFVWKCATTSGTPPSPRDGHTCSSWRNKIIVIGGEDENDNYLYDVHILDTDTLIWSKLCTSGQSLPPRAGHSTVSFGKNLFVFGGFTDAQSLYNDLYMLDIETGVWTKVATTPNGPSARFSVAGDCLDPYMSGVLVFVGGCNRNLEALDDMHYLYTGIARDSEQRPEKLSLRKQLKLKCLEQNPNLVQSPVLCGYGAGADSNQPMTILNYSQLSRLNIPVNQPLPPGKKMFQAKVKEKNPAGYTIETVIDGKPLRGILFINQPNTLNPVPNTSSRKRNVSEILSAASNGIHSHNVTASKVLRQDRMEDKQELRGESSESHELHKEADTIVVSSNPTTAAEPFKVSVNPEPEAVSLNQNGDEKNDTPRSLIESLKNDGSNDVTSSKGEVRIGGQINVPVSNYEIPRQMSDAPNFNADVLKPAAAEDAACPPYQGITGDCTTPRTGHSEPAKLT 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g02249 612 Gene3D - 1 144 IPR015915 GO:0005515
Pumo10g02249 612 MobiDBLite consensus disorder prediction 530 545 - -
Pumo10g02249 612 MobiDBLite consensus disorder prediction 460 487 - -
Pumo10g02249 612 SMART kelc_smart 239 285 IPR006652 GO:0005515
Pumo10g02249 612 SMART kelc_smart 82 131 IPR006652 GO:0005515
Pumo10g02249 612 SMART kelc_smart 188 238 IPR006652 GO:0005515
Pumo10g02249 612 SMART kelc_smart 31 81 IPR006652 GO:0005515
Pumo10g02249 612 Pfam Galactose oxidase, central domain 227 274 - -
Pumo10g02249 612 Pfam Galactose oxidase, central domain 176 226 - -
Pumo10g02249 612 Pfam Galactose oxidase, central domain 70 114 - -
Pumo10g02249 612 Pfam Galactose oxidase, central domain 18 68 - -
Pumo10g02249 612 MobiDBLite consensus disorder prediction 460 545 - -
Pumo10g02249 612 PANTHER KELCH REPEAT DOMAIN 15 431 - -
Pumo10g02249 612 Gene3D - 145 370 IPR015915 GO:0005515
Pumo10g02249 612 SUPERFAMILY Galactose oxidase, central domain 12 219 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g02249 Pumo-Chr10 31320292 31327626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g02249 108 314 Acyl Lipid Metabolism Gene Families AT3G05420 33.180 4.85e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g02249 - - gmx:100785267 1156.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02249 10 31320292 31327626 Pumo10g02249 10 31320292 31327626 ECH
Pumo4g01213 4 15484227 15491866 Pumo10g02249 10 31320292 31327626 PCT