Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01200 ATGCGACGACGGGCTGCCGAGTATCGGCGCCCGGTTCGACGGAGGTTTTCATATTGGATCTGGCTTCTCCTTGCCTTCTCCTCAATCCTCGGTTTGCTCCTCTTCCTTCTCCAACACAATCACCACCACCAAGATCCGCTTCATTATCCTTTGCCCGAGAGAAATGCAAGAGTTGAACATTTTGCTAAGGAGAGTTTGAATTTTACTGAAGAGATTTTAAGTGTAACATCATTTTCGCGGCAGTTAGCAGAACAAATGATTCTGGCCAAGGCTTATGTGGTTATTGCCAAAGAACACAACAATCTTCACCTTGCCTGGCAGCTTAGCACAAAAATCAGAAGTTGCCAGCTTTTGCTTTCAAAAGCTGCCATGACTGGTGAGCCCGTCACATTGGAGGAAGCAGAACCAATTATTAAAAGCCTTTCTTTTCTAATGTTTAAGGCACAAGATATCCATTATGACATTGCAACCACAATAGTGACTATGAAATCGCATATTCAAGCTCTCGAAGAGCGTGCCAATGCAGCAATAGTTCAAAGCACTGTGTTTGGCCAAATAGCAGCCGAAGCAGTACCTAAGAGTCTTCATTGCCTAAATGTGAAACTCATGTCTGATTGGCTAAAGATGCCATCCCTGCAAGAACTCTCAGATGAGTGGAAAAACTCCCCGCGGCTTGTGGACAACAATCTATATCATTTCTGCATATTTTCAGATAATGTACTGGCAACATCTGTAGTTGTAAACTCAACTGTCTCCAATGCTGACCATCCAAAGCAATTAGTCTTTCACATTGTCACTAATGGAGTCAACTATGGGGCAATGCAAGCATGGTTCCTAAATAATGACTTTAAAGGAGCCACCATAGAGGTACAGAACATTGAGGAGTTTCATTGGTTGAATGCATCTTATTCTCCTCTTGTCAAGCAGCTCCTCAATCCTGATTCACAAACTTTCCATTTTGGTGCATATCAAGATTTAAATGTTGAACCCAAAATGCGGAATCCCAAGTATTTGTCTTTACTGAATCATCTTCGGTTTTACATCCCTGAGATTTATCCGCAACTTGAGAAGGTTGTCTTCCTGGATGATGACCTTGTTGTCCAGAAGGATCTGACCCCTCTTTTCTCTCTGGATTTGCATGGGAATGTGAATGGTGCAGTTGAAACTTGTCTTGAAGCATTTCATCGTTACTACAAGTATCTCAACTTCTCAAACTCAATTATTAGCTCGAGGTTTGATCCACAGGCATGTGCATGGGCATTTGGTATGAACATTTTTGACTTGGTTGCATGGCGGAAGGCAAATGTGACCGCAAGATATCACTATTGGCAAGAGCAGAATGCTGATGGGACTCTCTGGAAGCTGGGGACACTTCCTCCTGCTCTTCTATGTTTTTATGGTTTGACAGAGCCACTTGACAGAAGATGGCATGTTTTAGGATTGGGTTATGACCTAAATATTGACAACCGCCTCATTGAAAGTGCAGCAGTTATTCACTTCAATGGGAACATGAAGCCATGGTTGAAGTTAGCTATAGGCAGGTATAAGCCACTATGGGACAAGTACATAAATCGAAGTCACCCTCATCTGCAAGATTGTGTCACAAGTTGA 1611 0.4271 MRRRAAEYRRPVRRRFSYWIWLLLAFSSILGLLLFLLQHNHHHQDPLHYPLPERNARVEHFAKESLNFTEEILSVTSFSRQLAEQMILAKAYVVIAKEHNNLHLAWQLSTKIRSCQLLLSKAAMTGEPVTLEEAEPIIKSLSFLMFKAQDIHYDIATTIVTMKSHIQALEERANAAIVQSTVFGQIAAEAVPKSLHCLNVKLMSDWLKMPSLQELSDEWKNSPRLVDNNLYHFCIFSDNVLATSVVVNSTVSNADHPKQLVFHIVTNGVNYGAMQAWFLNNDFKGATIEVQNIEEFHWLNASYSPLVKQLLNPDSQTFHFGAYQDLNVEPKMRNPKYLSLLNHLRFYIPEIYPQLEKVVFLDDDLVVQKDLTPLFSLDLHGNVNGAVETCLEAFHRYYKYLNFSNSIISSRFDPQACAWAFGMNIFDLVAWRKANVTARYHYWQEQNADGTLWKLGTLPPALLCFYGLTEPLDRRWHVLGLGYDLNIDNRLIESAAVIHFNGNMKPWLKLAIGRYKPLWDKYINRSHPHLQDCVTS 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01200 536 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 233 533 IPR029044 -
Pumo4g01200 536 FunFam Hexosyltransferase 233 529 - -
Pumo4g01200 536 SUPERFAMILY Nucleotide-diphospho-sugar transferases 231 534 IPR029044 -
Pumo4g01200 536 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 64 534 IPR029993 GO:0047262
Pumo4g01200 536 Pfam Glycosyl transferase family 8 235 510 IPR002495 GO:0016757
Pumo4g01200 536 CDD GT8_like_1 231 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01200 Pumo-Chr4 15273002 15276470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g01200 1 533 Glycosyltransferase AT2G20810 55.576 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01200 K13648 - gmx:100805886 1028.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01200 4 15273002 15276470 Pumo4g01200 4 15273002 15276470 ECH
Pumo4g01200 4 15273002 15276470 Pumo10g02279 10 32112160 32115515 PCT