Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01186 ATGTCGCGCACTCGCATTGCCATTCACCGCTTCCGCTTCATCTACACTGCCTTATCTTCAATCCTCTCATCGCCATCATCATCATCATCATCATCTGCATTTACTCGCTCCCAATTCCAATGCTCTCAACAATATCTCACGCGCGTCCACTTCCACGCTCCTCGTTACTCTTCATCCGCCACCAAACAAGCCTTAGTCGGTGGCGATGAGCACTATCCCACCGGAGACTTCGATTTCAAGCCCGTCACAGGCTTGAAAAAGTTCATCGTCAAGCTCAAGATGCTAACAGCTTTCCCCTGGGAGCGTCTCCGATACGGCACCGTATTAACGATCAAGTTGCGCGGCCAGATATCAGATCAGCTCAAGAGTAGGTTCTCCCCGGGATTATCTCTGCCTCAAATCTGCGATAATTTCTTCAAGGCAGCCTATGATCCTCGAATTTCCGGCATCTATCTCCATATTGATATTTTAAATTGTGGTTGGGCAAAGGTCGAAGAAATTCGAAGGCATATCTTGAATTTCAGAAAATCAGGAAAATTTATTGTGGCTTATGTCCCTTCATGTCGAGAAAAAGAGTATTATATTGCGTGCGCGTGTGAAGAGATATATGCCCCTCCAAGTGCATATTTTTCTTTGTTTGGATTGACTGTTCAAGCCCCATTTCTCAGAGGTGTTTTAGAGAATCTTGGAATTGAACCAGAAGTGGAAAGGATTGGCAAATACAAAAGTGTAGGAGATCAACTTACCCGTAGAACCATGTCTGAAGATCATCATGAGATGCTTACTGCGTTGCTTGATAATATCTATACAAATTGGCTGGACAAAGTCTCTTCTGCTAGAGGAAAGAAAAGAGAAGATATTGAGAACTTCATAAATGAAGGTGTCTATCAAGTAGAGAGACTTAAAGAAGAGGGCTTCATATCAGACATAATCTATGATGACGAGGTTATCACTCGGTTAAAGGAGAGACTTCAAGTTAAAACAGATAAAAATCTGCCTATGGTTGATAACAGAAAATACTCTGGAGTTAGGAAATCAACTCTTGGACTATCAGGTGGTAAAGAATTAATAGCCATCATCCGAGCTTCAGGGAGTATTCGTCGTATCGAGAGTCCATTAAGTACCCGTAGCTCTGGTATCATCGGAGAGAAGTTAATTGAGAAGATACGCAGAGTTAGAGAGTCAAATAAATACAAGGCTGCTATTATCCGAATTGACAGTCCAGGAGGGGATGCTCTTGCTTCTGATTTGATGTGGAGAGAAATCAGGCTTCTGGCTGCCTCAAAACCAGTCATTGCTTCAATGTCTGATGTGGCAGCAAGTGGAGGGTACTACATGGCAATGGGAGCAGGAGTTATTGTTGCAGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTCACAGGAAAACTTAACCTTGGGAAACTTTATGAGAAGATTGGCTTCAACAAAGAAATCATATCAAGGGGTAGATATGCTGAGCTCCGTGCAGCTGAACAACGATCTTTAAGACCAGATGAAGCAGAGCTATTTTCCAAGTCTGCGCAGCATGCTTATAAACAATTTCGAGATAAGGCAGCTTTTTCCAGATCTATGACCGTAGAGAAGATGGAAGAGGTTGCACAGGGAAGGGTTTGGACTGGTAAGGACGCAGCTTCTCACGGTTTGGTTGATGCTATTGGGGGCCTTTCTCGAGCTGTTGCCATAGCAAAATTGAAGGCCAATATACCTCAAGACAGTCAGATTACTCTTGCGGAGCTCTCGAGACCCAGCCCTACTCTACCCGAGATTTTAAGCGGTCTAGGTAATTCTCTCGTTGGAGTAGACAGAACTTTAAATGAATTACTACAGGACTTGACGTTTTCCCATGAAGTCCAAGCACGAATGGACGGAATCATGTTTGAGAAATTGGAAGGATATCCATATGCCAACCCCATTTTAGCATTGATAAAAGATTATCTTAGTTCCCTGTAG 1974 0.4326 MSRTRIAIHRFRFIYTALSSILSSPSSSSSSSAFTRSQFQCSQQYLTRVHFHAPRYSSSATKQALVGGDEHYPTGDFDFKPVTGLKKFIVKLKMLTAFPWERLRYGTVLTIKLRGQISDQLKSRFSPGLSLPQICDNFFKAAYDPRISGIYLHIDILNCGWAKVEEIRRHILNFRKSGKFIVAYVPSCREKEYYIACACEEIYAPPSAYFSLFGLTVQAPFLRGVLENLGIEPEVERIGKYKSVGDQLTRRTMSEDHHEMLTALLDNIYTNWLDKVSSARGKKREDIENFINEGVYQVERLKEEGFISDIIYDDEVITRLKERLQVKTDKNLPMVDNRKYSGVRKSTLGLSGGKELIAIIRASGSIRRIESPLSTRSSGIIGEKLIEKIRRVRESNKYKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGAGVIVAESLTLTGSIGVVTGKLNLGKLYEKIGFNKEIISRGRYAELRAAEQRSLRPDEAELFSKSAQHAYKQFRDKAAFSRSMTVEKMEEVAQGRVWTGKDAASHGLVDAIGGLSRAVAIAKLKANIPQDSQITLAELSRPSPTLPEILSGLGNSLVGVDRTLNELLQDLTFSHEVQARMDGIMFEKLEGYPYANPILALIKDYLSSL 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01186 657 PIRSF Protease_4_SppA 31 657 IPR004634 GO:0006465|GO:0008233|GO:0016020
Pumo4g01186 657 PANTHER PROTEASE 4 68 656 - -
Pumo4g01186 657 CDD S49_Sppa_N_C 357 571 IPR047272 -
Pumo4g01186 657 Gene3D - 218 281 - -
Pumo4g01186 657 NCBIfam signal peptide peptidase SppA 358 570 IPR004635 GO:0006508|GO:0008233
Pumo4g01186 657 Gene3D - 353 503 - -
Pumo4g01186 657 Pfam Peptidase family S49 174 326 IPR002142 GO:0006508|GO:0008233
Pumo4g01186 657 Pfam Peptidase family S49 425 575 IPR002142 GO:0006508|GO:0008233
Pumo4g01186 657 SUPERFAMILY ClpP/crotonase 359 562 IPR029045 -
Pumo4g01186 657 CDD S49_SppA_67K_type 109 322 IPR047217 -
Pumo4g01186 657 Gene3D - 506 620 - -
Pumo4g01186 657 Gene3D - 104 217 - -
Pumo4g01186 657 SUPERFAMILY ClpP/crotonase 94 312 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01186 Pumo-Chr4 15119186 15137027 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01186 K04773 - gmx:100809623 1152.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01186 4 15119186 15137027 Pumo4g01186 4 15119186 15137027 ECH
Pumo4g01186 4 15119186 15137027 Pumo10g02302 10 32637867 32650605 PCT