Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01091 ATGAGCTGGTCAGGAGGAGATTGGATGTGTGGTGTTTGCCAGCACATAAATTTCAAGAAGAGGGAAGCATGCCAGAGTTGTGGATACCCCAAGTATGGGGGACCTGACCCTTCAACCTACAGATACAACAGGACTGAAGCTTTGGCAGGGGACTGGTTCTGCAACTGTGGAGCTCACAACTATGCCAGTCGATCAAGCTGCTATAGATGTGGTGCAATCAAAGATTATTACTCTTCAGGATATGGCACCAACTCTGGAGAATATGGATCTGACACTTTTCCCCCAGGATGGAAGACTGGAGACTGGCTTTGCCCAAGAATCGGCTGTGGAGTACATAATTATGCTAGCAGGACAGAATGCTTCAAATGCAAAATGCCAAGGGATTATGGTGAGAAAACTGAGAAGAAATTTCAGAAGACCTGGAATATCAATCATTTCCCCCAACATCTTTCTTCTCCAAACAACATTATATCTTGCTTTCTCTACATCAAGCTCCAGATAAATCATGGATCAAGGCCCTCTGTAATAGCCATAGCATTGCTTTTTCATTAG 552 0.442 MSWSGGDWMCGVCQHINFKKREACQSCGYPKYGGPDPSTYRYNRTEALAGDWFCNCGAHNYASRSSCYRCGAIKDYYSSGYGTNSGEYGSDTFPPGWKTGDWLCPRIGCGVHNYASRTECFKCKMPRDYGEKTEKKFQKTWNINHFPQHLSSPNNIISCFLYIKLQINHGSRPSVIAIALLFH 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01091 183 Gene3D - 42 75 - -
Pumo4g01091 183 Gene3D - 93 129 - -
Pumo4g01091 183 Gene3D - 1 35 - -
Pumo4g01091 183 ProSiteProfiles Zinc finger RanBP2 type profile. 98 129 IPR001876 -
Pumo4g01091 183 SMART zf_4 100 126 IPR001876 -
Pumo4g01091 183 SMART zf_4 6 30 IPR001876 -
Pumo4g01091 183 SMART zf_4 50 73 IPR001876 -
Pumo4g01091 183 ProSitePatterns Zinc finger RanBP2-type signature. 102 123 IPR001876 -
Pumo4g01091 183 SUPERFAMILY Ran binding protein zinc finger-like 92 129 IPR036443 -
Pumo4g01091 183 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Pumo4g01091 183 SUPERFAMILY Ran binding protein zinc finger-like 46 76 IPR036443 -
Pumo4g01091 183 SUPERFAMILY Ran binding protein zinc finger-like 3 34 IPR036443 -
Pumo4g01091 183 Pfam Zn-finger in Ran binding protein and others 98 126 IPR001876 -
Pumo4g01091 183 Pfam Zn-finger in Ran binding protein and others 49 72 IPR001876 -
Pumo4g01091 183 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Pumo4g01091 183 PANTHER ZINC FINGER PROTEIN 44 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01091 Pumo-Chr4 14030611 14031682 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01091 - - gmx:100780120 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g01091 4 14030611 14031682 Pumo10g02362 10 34618110 34620347 PCT