Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g01090 ATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGTTTGCCAACACATAAATTTCAAGAAGAGGGAAGCATGCCAGAGTTGTGGATACCCCAAGTATGGGGGTCCTGACCCTTCAACCTACAGATACAACAGGACTGAAGCTTTGGCAGGGGACTGGTTTTGCAACTGTGGAGCTCACAACTATGCCAGTCGATCAAGCTGCTTCAGATGTGGTTCAATGAAAGATGATTACTCTTCAGGATATGGCAACAACTCTGGTGGATATGGATCTGACACTTTCCCCCCAGGATGGAAGACTGGAGACTGGCTTTGCCCAAGACTTGGATGTGGAGTGCATAATTATGCTAGCAGGACAGAATGCTATAAATGCAAAATGCCAAGGGATTTTGGTGAGAAAAGTTTAGTGTTGTTTCATCTGTTCTTATTGAAAATATGGTCAAGATGTTTCCAAAACATGCTATTTAACCTAAGTTCCAATGAAACATTTATTACTTCTGTTTCAGGTGGTGCAGACTGA 516 0.4341 MSWSGGDWMCGVCQHINFKKREACQSCGYPKYGGPDPSTYRYNRTEALAGDWFCNCGAHNYASRSSCFRCGSMKDDYSSGYGNNSGGYGSDTFPPGWKTGDWLCPRLGCGVHNYASRTECYKCKMPRDFGEKSLVLFHLFLLKIWSRCFQNMLFNLSSNETFITSVSGGAD 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g01090 171 SMART zf_4 100 126 IPR001876 -
Pumo4g01090 171 SMART zf_4 6 30 IPR001876 -
Pumo4g01090 171 SMART zf_4 50 73 IPR001876 -
Pumo4g01090 171 ProSitePatterns Zinc finger RanBP2-type signature. 102 123 IPR001876 -
Pumo4g01090 171 SUPERFAMILY Ran binding protein zinc finger-like 46 76 IPR036443 -
Pumo4g01090 171 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Pumo4g01090 171 PANTHER ZINC FINGER PROTEIN 44 131 - -
Pumo4g01090 171 Gene3D - 42 76 - -
Pumo4g01090 171 Gene3D - 93 129 - -
Pumo4g01090 171 Gene3D - 1 35 - -
Pumo4g01090 171 Pfam Zn-finger in Ran binding protein and others 49 74 IPR001876 -
Pumo4g01090 171 Pfam Zn-finger in Ran binding protein and others 98 126 IPR001876 -
Pumo4g01090 171 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Pumo4g01090 171 ProSiteProfiles Zinc finger RanBP2 type profile. 48 76 IPR001876 -
Pumo4g01090 171 ProSiteProfiles Zinc finger RanBP2 type profile. 98 129 IPR001876 -
Pumo4g01090 171 SUPERFAMILY Ran binding protein zinc finger-like 92 129 IPR036443 -
Pumo4g01090 171 SUPERFAMILY Ran binding protein zinc finger-like 3 34 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g01090 Pumo-Chr4 14019078 14021091 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g01090 - - gmx:100780120 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g02362 10 34618110 34620347 Pumo4g01090 4 14019078 14021091 PCT