Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00761 ATGGCAACCGAGAGTCCAATCAGGATTTCAGAAGCTGGGGGTAAATGGTCATCACTTAAGGAAGCTGAAACTTTTGGTTCATCATCCCGTCACATGGCAACAGAGGATCTGGGTATATTTTTGAATGGCCATAGGTTTCATGGCAGTGGAAAGGATGTGGCACCCAATCGCAGTGGCAGTGCACCTCCAAGCATGGAAGGCTCATTTCTTGCCATAGAAAATTTATTATCCCAGAACACCACCAGGAATGCGAGCTTGGGATCTCTGAACAGAGCTATGCAAAAATATGATATCGGTAAAGGGTCTTTTCATTTGTCACGAGGAACTCTTGCAACACACAAGGAGGAGTCTGAGGATGATTCGACCCAACAGCTGTATGATAATGAGTTAGATAAGGCTAGTGAAAAATGGCATAGACAGGATGTGGCTTCAACATCATCTCAGCACAAAAATTTAGTACTGGAAGATCTTCCCCATACCATGTCACCTGTATATAATAAGTCTCTTGGAGTTGTGGATGAACTAGTTGACGTAGATACTGGTTCCAGTTCTTCTCATGACCCTCCTGTCACTACAGTGGATGCTGTAAAACATACCATAGGTGCAGATGATATAAGGCTGTCATCAACTGTTGATTCCCCTGCCCCTGTCACAAGCTCATCATCTCTCAATTCCACTGGAAGCAAGGGTTTTAATGACTTAGATGTTACAATCATAGAATCTCAATTAAGGGCTCTCAATGTATCTAATCTACCAAATTCAGAAAGCCAGAGTTATGAAGATAAATGGAAGAACAGTTGCCAGAATAATATTATGCAACACCAGCAACAAAACTATCCATGTGAAGTGCCTAGCACCAATTCTCAAAGTGAAAACTGTGCATACATTGGTATGGAACAGTTTCTTCACAATCCCAGCAAGTTCTCCTCTGATGTCCAGCCTTTACTGCAATCATCAGGGTATACACCTCCACTATATGCTACAGCAGCAGCTTATATGACCTCAACAAATCCATTTTACACTAATTTGCAAGCTTCGGGTATATATTCTCCACAATATGTAGGTGCATACCCTTTTAGTCCCACAGCTGTTCCTCCATATATTGCTGCATACCCTCCTCATGGTTCTGTACCACTTGTTGAGGGGGCTACTGGTTCTAGTTTTACTCCCCAAGCACCAGGAGTTTCTTCTACTGCGGGAAACATTTCACACGGAGCTGAAATGATACATGCAAACAAGTTTTTTGGACAATTTGGATTTCCTCTGCAGCCATCTTTTGGTGATCCCATTTACATGCAATATCATCAACAACCTTTTGTGGAGGGTTATGGTGTATCTGGTCATCTGCTGACACCTAGAGCCAGTGTTGGTGGCCAAATTGGTCCTTTTGATTCCCAAAAAAGGCCCAATAGTGGTGCTTACTTGGATGACAAAAAATTACATAATCAGAGAAGTGGTGCTAATTTGAATTCTAATAGAGGTGGGCTAATACATCCTGGTTATGTTGGACACCCTTCAAATATGGGTTTCGTAACCCAGTATCCAAGTTCCCCACTTTCTAGACCAGTTTTATCAGGATACCCAGAAAGTAGTCCTGGCCTTCTAGGTGGAAGGAATGAAATGAAACTCTCTCCAGCTTCTGGTAGAAATGGAGGTTTATTATCTGGATGGCAAGGTCAAAGAGCCTTTGACAGTGCTCATGACCCCAAAATTGCTATTTTTCTTGAAGAGTTAAAATCTGGCAAAGGTCGCAGATTTGAGCTATCTGATATTATTGGACACATAGTTGAATTTAGCACTGATCAGCATGGGAGCCGTTTCATACAGCAGAAGTTGGAAAGCTGTGGTGTTGAAGAGAAGGAGTTAGTGTTCAAAGAAGTTCTTCCACATACTTCTAAATTAATGACTGATGTATTTGGCAACTATGTAATCCAAAAGTTTTTCGAGTATGGAAGCCCTGAGCAGAGGAAAGAACTTGCAAATCGACTTCTTGGACAGATACTACCTTTAAGTCTGCAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTTATTGATCTTGAACAGAAAGTTCAGCTTGTTCATGAGCTGGATGGAAATGTTATGAGATGTGTCCGTGACCAAAATGGGAATCATGTAATACAGAAGTGCATTGAATCTATTCCAACTAAAAGCATTGACTTTATAATATCTGCATTTCGTGGTCAAGTTGCTATTCTATCTATGCATCCTTATGGTTGCCGAGTCATACAGAGAGTTCTCGAGCATTGTTCAGATGAGGTTCAATGTCAGTTTATTGTGGATGAAATCTTGGAGTCAGTTTTTACTCTTGCTCAAGACCAGTATGGTAATTATGTTACTCAGCATGTGTTAGAGAGAGGAAAGCCTCAGGAAAGGAGCCAAATTATTAGCAAGCTGTCAGGACATATCATCCAATTAAGCCAGCATAAATTTGCATCAAATGTTGTTGAGAAATGTTTGGAGTATGGTGATGCCACTGAACGGCAGTTGTTAATTGCAGAGATTGTTGGACATGACAAACAAAATGATAATTTATTGACAATGATGAAAGACCAATTTGCAAATTATGTGATCCAGAAGGTTCTTGAGATCTGTTCTGAAAATCAGCGAGTAATGTTACTTTCTCGCATAAGACTTCATGCTCATGCTTTGAAGAAATACACTTATGGAAAACACATTGTGGCTCGGTTTGAACAGCTGCTTGGAGAAGGAGACAGATGA 2748 0.4098 MATESPIRISEAGGKWSSLKEAETFGSSSRHMATEDLGIFLNGHRFHGSGKDVAPNRSGSAPPSMEGSFLAIENLLSQNTTRNASLGSLNRAMQKYDIGKGSFHLSRGTLATHKEESEDDSTQQLYDNELDKASEKWHRQDVASTSSQHKNLVLEDLPHTMSPVYNKSLGVVDELVDVDTGSSSSHDPPVTTVDAVKHTIGADDIRLSSTVDSPAPVTSSSSLNSTGSKGFNDLDVTIIESQLRALNVSNLPNSESQSYEDKWKNSCQNNIMQHQQQNYPCEVPSTNSQSENCAYIGMEQFLHNPSKFSSDVQPLLQSSGYTPPLYATAAAYMTSTNPFYTNLQASGIYSPQYVGAYPFSPTAVPPYIAAYPPHGSVPLVEGATGSSFTPQAPGVSSTAGNISHGAEMIHANKFFGQFGFPLQPSFGDPIYMQYHQQPFVEGYGVSGHLLTPRASVGGQIGPFDSQKRPNSGAYLDDKKLHNQRSGANLNSNRGGLIHPGYVGHPSNMGFVTQYPSSPLSRPVLSGYPESSPGLLGGRNEMKLSPASGRNGGLLSGWQGQRAFDSAHDPKIAIFLEELKSGKGRRFELSDIIGHIVEFSTDQHGSRFIQQKLESCGVEEKELVFKEVLPHTSKLMTDVFGNYVIQKFFEYGSPEQRKELANRLLGQILPLSLQMYGCRVIQKALEVIDLEQKVQLVHELDGNVMRCVRDQNGNHVIQKCIESIPTKSIDFIISAFRGQVAILSMHPYGCRVIQRVLEHCSDEVQCQFIVDEILESVFTLAQDQYGNYVTQHVLERGKPQERSQIISKLSGHIIQLSQHKFASNVVEKCLEYGDATERQLLIAEIVGHDKQNDNLLTMMKDQFANYVIQKVLEICSENQRVMLLSRIRLHAHALKKYTYGKHIVARFEQLLGEGDR 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00761 915 ProSiteProfiles Pumilio RNA-binding repeat profile. 662 697 IPR001313 GO:0003723
Pumo4g00761 915 SMART pum_5 590 625 IPR001313 GO:0003723
Pumo4g00761 915 SMART pum_5 626 661 IPR001313 GO:0003723
Pumo4g00761 915 SMART pum_5 771 806 IPR001313 GO:0003723
Pumo4g00761 915 SMART pum_5 734 770 IPR001313 GO:0003723
Pumo4g00761 915 SMART pum_5 698 733 IPR001313 GO:0003723
Pumo4g00761 915 SMART pum_5 807 842 IPR001313 GO:0003723
Pumo4g00761 915 SMART pum_5 662 697 IPR001313 GO:0003723
Pumo4g00761 915 SMART pum_5 849 884 IPR001313 GO:0003723
Pumo4g00761 915 ProSiteProfiles Pumilio RNA-binding repeat profile. 626 661 IPR001313 GO:0003723
Pumo4g00761 915 ProSiteProfiles Pumilio RNA-binding repeat profile. 771 806 IPR001313 GO:0003723
Pumo4g00761 915 ProSiteProfiles Pumilio RNA-binding repeat profile. 843 884 IPR001313 GO:0003723
Pumo4g00761 915 MobiDBLite consensus disorder prediction 211 226 - -
Pumo4g00761 915 ProSiteProfiles Pumilio RNA-binding repeat profile. 807 842 IPR001313 GO:0003723
Pumo4g00761 915 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 570 910 IPR033133 GO:0003723
Pumo4g00761 915 Pfam Pumilio-family RNA binding repeat 811 844 IPR001313 GO:0003723
Pumo4g00761 915 Pfam Pumilio-family RNA binding repeat 633 662 IPR001313 GO:0003723
Pumo4g00761 915 Pfam Pumilio-family RNA binding repeat 666 699 IPR001313 GO:0003723
Pumo4g00761 915 Pfam Pumilio-family RNA binding repeat 594 628 IPR001313 GO:0003723
Pumo4g00761 915 Pfam Pumilio-family RNA binding repeat 853 886 IPR001313 GO:0003723
Pumo4g00761 915 Pfam Pumilio-family RNA binding repeat 709 733 IPR001313 GO:0003723
Pumo4g00761 915 Pfam Pumilio-family RNA binding repeat 776 808 IPR001313 GO:0003723
Pumo4g00761 915 Pfam Pumilio-family RNA binding repeat 738 773 IPR001313 GO:0003723
Pumo4g00761 915 FunFam Pumilio homolog 1 isoform 2 570 914 - -
Pumo4g00761 915 ProSiteProfiles Pumilio RNA-binding repeat profile. 734 770 IPR001313 GO:0003723
Pumo4g00761 915 SUPERFAMILY ARM repeat 585 906 IPR016024 -
Pumo4g00761 915 ProSiteProfiles Pumilio RNA-binding repeat profile. 590 625 IPR001313 GO:0003723
Pumo4g00761 915 ProSiteProfiles Pumilio RNA-binding repeat profile. 698 733 IPR001313 GO:0003723
Pumo4g00761 915 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 222 908 - -
Pumo4g00761 915 Gene3D - 572 911 IPR011989 -
Pumo4g00761 915 MobiDBLite consensus disorder prediction 207 226 - -
Pumo4g00761 915 CDD Pumilio 585 905 IPR033712 GO:0003723
Pumo4g00761 915 MobiDBLite consensus disorder prediction 459 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00761 Pumo-Chr4 9980148 9998682 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00761 K17943 - gmx:100819166 1572.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00761 4 9980148 9998682 Pumo2g01569 2 29383333 29390463 PCT