Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01569 ATGGCAACTGAGAGTCCAATTAGAATCTCAGAAGCTGGGGGTAAATGGCCCTCTCATAAGGAAGCTGCAGCTTTCGGTTCACCGTCTCGTAACATGGCGACGGAGGATTTGGGTATACTTCTGAAGGGCCATAGGTTCCATGGTGGTGGAAAGGATGTGGCACCCAATCGCAGTGGCAGTGCACCTCCCAGTATGGAAGGCTCATTTCTGGCCATAGAAAATCTCTTACCCCAGCAGAACACCACCCAGAATGTGAGCTTTGCAACACTAAGCAGTGCTATGCAAAATTGCGAGTCTGAAGAACAATTGCGAGCTGATCCAGCTTATTTGGCCTATTACAGTTCCAATGTCAACCTAAACCCTAGACTTCCTCCCCCGCTTACGTCCTGGGAAAATCGCCATCTAGGACGTCATATTGGCAGTTTTAGAAATAATTGGAGAATGTCTACTGCAGATGATAGCGGTAAAAGTTCTTTACATTTGCCTCAAAGGACTCTTTCCACGCACAAGGAGGAGTCTGAAGATGATTCACCCCAACAGCCATATGATGACGAATTAGTTAAGGCAAGTGGAATAAGGCATAGACCTGATGCAGCTTCATTCGCATCTCAGCACAAAAATATGGTTGATTTAATTCAGGAAGATTTTCCTCGCACCATGTCACCTGTATATAATAAGTCTCTTTCTGTAAGTCATGGATTAGTGGATAAACCAATTGACTTAGAAGCTGGTTCTAGTTCTTCTCATGACCCCCCTGTTACTACAATGGAGGCTGCTAAACCTACTATAGGTGCAGATGACATAAGGGTGCCATCAAGTGTTGATACCCATGCCCCAGTTGCAAGTTCATCATCTCTTGAATCCACTGGCAGCATTGGTGTTAGTGACATAGACGTTGCAACTGTTGAGTCTCAACTAAGGGCTCTTGGTGTATCTAATGTACCAAATTCAGAAAGTCTGAGTTATGAAGAAAAATGGAAGGCCAGCAACCAGTACAATTTGATGCAACGCCAGGGATTCCAGCAACAAAACAATCTGTATGATGTTCCTTGTGCCAATTCTCAAAATGTAAATTCTGTGTGTGTTGGTAGGGAACAGTTTCCTTTTAATTCCAGCAAGTTCTCCAATGTCCAGCCACTACTGCAGTCATCTGGGTTTACACCTCCCCTATATGCCACAGCAGCTGCTTATATGTCCTCAGCCAATCCATTTTACACTAATATGCAGGCCTCAGGTATATATCCTCCACAATATGTTGGTGGATACACTGTAAATCCCACAACTTTTCCTCCATATGTGTCCGCGTACCCTCCTCATGGTGCTGTACCTCTTGTCGCTGATGGATCTACTAGTTCCAATTATGCTCCACTAACACCAGGGGTTTCAACTGGGGGAAACATTTCACTTGGAGCTGAAATGGTACAGACAAACAAGTACCTTGGGCAATTTGGATTTCCTCTGCAGCCTTCTTTTGGTGATCCTATGTACATGCAATATCATCAGCAACCTTTTGTGGAGGGATATGGTATTGCTGGTCATTTTGATCCACTGGCACCTAGAGCAAGTGGTGTTAGCCAAATTAGTCCTTATGATTCGCAAAAAAGGCCCACTACTGGTGCTTATTTGGATGATAAAAAATTACCTGATCAGAGAACTGCTGCTAATATGAACTCAAGAAGAGGTGGATCATTGATTCCTAGTTATTTTGGACACATGCCAAACATGGGTTTTGTAATGCAGTATCCGAGTTCACCACTTCCTAGTCCAGTTTTATCAGGCTACCCAGAAAGAAGTCCTGGCCTTCCAGGAGTTAGGAATGAAATAAAACTTTCCCCAGCTTCTGGAAGAAATGGAGGCATAACATCTGGTTGGCAAGGTCAGAGATCTTTTGACAGTGCTCATGACCCCAAAATTGTTAATTTTCTTGAAGACTTAAAATCTGGCAAAGGTCGAAGATTTGAGCTATCTGATATTATTGGACATATTGTTGAATTTAGTTCTGATCAGCATGGAAGTCGATTTATACAACAGAAGTTGGAAAGTTGTAGTGTTGAAGAGAAGACATTGGTGTTTAAAGAGGTTCTTCCACATGCTTCTAAATTAATGACTGATGTATTTGGTAACTATGTAATACAGAAGTTTTTTGAATATGGAAGCCCTGAGCAGAGGAGAGAACTTGCAGATCGACTTGTTGGACAGATACTGCCTTTAAGTCTGCAGATGTACGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTTATTGAGCTTGAACAGAAAGCTCAGCTTGTTCATGAGCTAGATGGAAATGTTATGAGATGTGTTCGTGATCAAAATGGTAATCATGTAATTCAAAAGTGCATTGAATCTATTCCAACCAAAAAGATTAGCTTTATACTATCTGCATTTCGTGGTCAAGTTGCTACTCTATCAATGCATCCCTATGGATGCCGAGTCATACAGAGAGTTCTAGAACATTGCACGGACGAGAGTCAATGTCAGTTTATTGTGGATGAAATCTTGGAGTCAGTTTGTGCTCTTGCTCAGGACCAGTATGGTAATTATGTTACACAGCATGTCTTGGAGAGAGGAAAGCCTCAGGAAAGGAGCCAAATTATCAGCAAGTTGTCGGGACATATTGTTCAATTAAGCCAGCATAAGTTTGCTTCAAATGTTGTAGAAAAATGTTTGGAGTATGGTGATGCCACTGAACGGGAGTTGCTAGTTGCTGAGATATTTAGGCATGATAAACAATGTGATAATTTATTGACAATGATGAAAGATCAATTTGCGAATTATGTGGTCCAGAAGGTCATTGATATCTGTTCTGAAAATCAGCGAGCAATGTTGCTTACTCACGTAAGAGATCATGCTCATGCTTTGAAGAAATACACTTATGGAAAACACATTGTGGCTCGGTTGGAACATCAATTTGGAGCTGAATGGGACTATGCAAATATTGATTTAGTTGTTGTTGAGATGAAGACAACAAGAGACATTTGA 3000 0.4183 MATESPIRISEAGGKWPSHKEAAAFGSPSRNMATEDLGILLKGHRFHGGGKDVAPNRSGSAPPSMEGSFLAIENLLPQQNTTQNVSFATLSSAMQNCESEEQLRADPAYLAYYSSNVNLNPRLPPPLTSWENRHLGRHIGSFRNNWRMSTADDSGKSSLHLPQRTLSTHKEESEDDSPQQPYDDELVKASGIRHRPDAASFASQHKNMVDLIQEDFPRTMSPVYNKSLSVSHGLVDKPIDLEAGSSSSHDPPVTTMEAAKPTIGADDIRVPSSVDTHAPVASSSSLESTGSIGVSDIDVATVESQLRALGVSNVPNSESLSYEEKWKASNQYNLMQRQGFQQQNNLYDVPCANSQNVNSVCVGREQFPFNSSKFSNVQPLLQSSGFTPPLYATAAAYMSSANPFYTNMQASGIYPPQYVGGYTVNPTTFPPYVSAYPPHGAVPLVADGSTSSNYAPLTPGVSTGGNISLGAEMVQTNKYLGQFGFPLQPSFGDPMYMQYHQQPFVEGYGIAGHFDPLAPRASGVSQISPYDSQKRPTTGAYLDDKKLPDQRTAANMNSRRGGSLIPSYFGHMPNMGFVMQYPSSPLPSPVLSGYPERSPGLPGVRNEIKLSPASGRNGGITSGWQGQRSFDSAHDPKIVNFLEDLKSGKGRRFELSDIIGHIVEFSSDQHGSRFIQQKLESCSVEEKTLVFKEVLPHASKLMTDVFGNYVIQKFFEYGSPEQRRELADRLVGQILPLSLQMYGCRVIQKALEVIELEQKAQLVHELDGNVMRCVRDQNGNHVIQKCIESIPTKKISFILSAFRGQVATLSMHPYGCRVIQRVLEHCTDESQCQFIVDEILESVCALAQDQYGNYVTQHVLERGKPQERSQIISKLSGHIVQLSQHKFASNVVEKCLEYGDATERELLVAEIFRHDKQCDNLLTMMKDQFANYVVQKVIDICSENQRAMLLTHVRDHAHALKKYTYGKHIVARLEHQFGAEWDYANIDLVVVEMKTTRDI 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01569 999 ProSiteProfiles Pumilio RNA-binding repeat profile. 874 909 IPR001313 GO:0003723
Pumo2g01569 999 Pfam Pumilio-family RNA binding repeat 805 840 IPR001313 GO:0003723
Pumo2g01569 999 Pfam Pumilio-family RNA binding repeat 661 695 IPR001313 GO:0003723
Pumo2g01569 999 Pfam Pumilio-family RNA binding repeat 698 729 IPR001313 GO:0003723
Pumo2g01569 999 Pfam Pumilio-family RNA binding repeat 843 875 IPR001313 GO:0003723
Pumo2g01569 999 Pfam Pumilio-family RNA binding repeat 733 766 IPR001313 GO:0003723
Pumo2g01569 999 Pfam Pumilio-family RNA binding repeat 776 799 IPR001313 GO:0003723
Pumo2g01569 999 Pfam Pumilio-family RNA binding repeat 878 911 IPR001313 GO:0003723
Pumo2g01569 999 Pfam Pumilio-family RNA binding repeat 920 951 IPR001313 GO:0003723
Pumo2g01569 999 ProSiteProfiles Pumilio RNA-binding repeat profile. 765 800 IPR001313 GO:0003723
Pumo2g01569 999 FunFam Pumilio homolog 1 isoform 2 636 982 - -
Pumo2g01569 999 ProSiteProfiles Pumilio RNA-binding repeat profile. 657 692 IPR001313 GO:0003723
Pumo2g01569 999 MobiDBLite consensus disorder prediction 263 290 - -
Pumo2g01569 999 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 637 977 IPR033133 GO:0003723
Pumo2g01569 999 ProSiteProfiles Pumilio RNA-binding repeat profile. 801 837 IPR001313 GO:0003723
Pumo2g01569 999 CDD Pumilio 652 973 IPR033712 GO:0003723
Pumo2g01569 999 ProSiteProfiles Pumilio RNA-binding repeat profile. 729 764 IPR001313 GO:0003723
Pumo2g01569 999 MobiDBLite consensus disorder prediction 1 21 - -
Pumo2g01569 999 ProSiteProfiles Pumilio RNA-binding repeat profile. 838 873 IPR001313 GO:0003723
Pumo2g01569 999 SMART pum_5 657 692 IPR001313 GO:0003723
Pumo2g01569 999 SMART pum_5 916 951 IPR001313 GO:0003723
Pumo2g01569 999 SMART pum_5 838 873 IPR001313 GO:0003723
Pumo2g01569 999 SMART pum_5 729 764 IPR001313 GO:0003723
Pumo2g01569 999 SMART pum_5 765 800 IPR001313 GO:0003723
Pumo2g01569 999 SMART pum_5 874 909 IPR001313 GO:0003723
Pumo2g01569 999 SMART pum_5 693 728 IPR001313 GO:0003723
Pumo2g01569 999 SMART pum_5 801 837 IPR001313 GO:0003723
Pumo2g01569 999 ProSiteProfiles Pumilio RNA-binding repeat profile. 910 951 IPR001313 GO:0003723
Pumo2g01569 999 MobiDBLite consensus disorder prediction 276 290 - -
Pumo2g01569 999 MobiDBLite consensus disorder prediction 522 543 - -
Pumo2g01569 999 SUPERFAMILY ARM repeat 641 974 IPR016024 -
Pumo2g01569 999 Gene3D - 638 979 IPR011989 -
Pumo2g01569 999 ProSiteProfiles Pumilio RNA-binding repeat profile. 693 728 IPR001313 GO:0003723
Pumo2g01569 999 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 109 975 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01569 Pumo-Chr2 29383333 29390463 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01569 K17943 - gmx:100780168 1807.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00761 4 9980148 9998682 Pumo2g01569 2 29383333 29390463 PCT