Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00749 ATGCCGCCGGCTGTGATGGATCCGCCATTGCCGGAATCATCGTCGGTGCCGTCTTTAAGCTCCGACGCCGGTTCTCTGGGATCGGCACCGGAGAGTCGGCGATTCGGGGATCTTAGAGGTTTGCAGTGGCGCATAAATCTTGGGGTGTTGCCATCTTCTTCCATTGATGATCTTCGTCGTGCCACCGCTAATTCTAGAAGGAGGTATGCTGGTTTGAGAGGGCGCCTCCTGGTTGATCCTCATACTCCAAAGGATGGAAGTAGTTCACCCGATCTTGTCATGGACAACCCACTCTCACAAAATCCAGACAGTACATGGAGTCGCTTTTTTCGCAATGCGGAGATGGAGAAGATGGTTGATCAGGATTTATCACGTTTATACCCAGAACATGGCAACTATTTCCAGACGCCAGGATGCCAAGGCATATTGAGACGAATTTTATTACTATGGTGTCTTAGACACCCAGAGTGTGGTTATAGACAAGGAATGCATGAATTACTTGCTCCGGTGCTTTATGTTCTCCAATTTGATGTGGAGTGTCTTTCAGAAGTTCGAAAGCTTTATGAAGATCACTTCACAGACAGATTTGATGACCTCTTCTGTCAAGAGAATGATCTTTCTTACAGCTTTGATTTTAGAAAATCTGCGGACTCGATGGAGGATGAAATTGACTCCAATGGAAATGCAATGAAAATCAAGAGTCTTGATGAGCTTGATCCTAGGATACAGAACATTGTATTGCTAAGTGACGCTTATGGGGCTGAAGGTGAACTGGGCGTTGTTTTATCTGAGAAATTCATCGAACATGATGCTTACTGTATGTTTGATGCTTTAATGAATGGGGCACGTGGTTCAATTGCAATGGCTGATTTCTTCTCTTATTCCCCTTTGCCTGGGTCCCATACTGGCTTGCCTCCTGTAATTGAAGCTTCTGCTGCATTGTATCATTTGTTGTCTCATGTGGATTCGTCTCTGCATGGCCATCTTGTTGATCTTGGGGTTGAACCCCAGTACTTTGCTCTCCGCTGGTTGCGAGTTTTATTTGGACGGGAATTTTCACTCAGCAACCTCTTGATAATCTGGGATGAAATCTTTTTATCAGATAACAGTAAAGTGGAAAAACATGCTGAGGACAATGCGGACTCTGGTTTTAGGATCTTCAATTCGTCTCGTGGAGCATTTATCTTAGCTATGGCTGTAGCAATGATGCTTCATATAAGATCTTCACTACTTGCAGCTGAAAATCCTACAACCTGTCTCCAGAGATTATTAAACTTCCCTGAGAACAGTAACGTTGAAAAACTAATAGAGAAAGCTAAATCCTTGCAGGCTCTCGCATTAAGCACTGAGATTTCATCCTCAATGCCTTCATTTGTCGAGTATCATAACCAGGGTAAATCAGCTATTGCAAGATCTCGCACCCTTTCATCTGAATCAATTTCACCAAAAACGCCTCTGAATTTGGTACCTGATAGCTACTGGGAAGAAAAGTGGAGAGTTGTCCACAAGGCTGAAGAACTCAAACAAGATGGAGTAGAAAAACAGGTTCCAACTCGGAAGAAGGGATGGACAGAAAAGGTAAAGTCCAATTTGAAAAGAACAGAATCTGACCCCTCCTCATCAAGGATTGAGAGTGGTAAAAAGGAATCCAAGTCACCGGTTAGGCGCAATTTGTTAGAAGATCTTTCTAAGGAACTTGGCTTTGAGGAAGATACTGGAAAACTCTGCTGTCATGATAATCTGTCTGCAAGAGTTGAAGAGGAGCAACAGGAAGATGGCTCCGAAGGCAGCAACAACTATTCTCTTGAAGATAGATGTCTGAATCCAAACACAAGTAGTGAGGAAAACTCACCTGTTATTTCTTGCCCAGCTAGTCCTCCTAATGAGGCCAGTGATCACAAAAATGACTATGAGAAAAGTAGTGTTGGGTCTAATTTATCCCTTGATGGAATTAATGAAGCTTCACTTGGTAGTCCCATTGATTCACCTCTTCCAATCTCTGATCATCCTGAGAACGGACCTCAGACACCACGGAGCAATAATATTAATAATTCTGCAGGAAATTCAACCACACATTCTAAGGAGAGAAAATTGAACAAATTCCAATGGCTATGGAAATTTGGGCGGAATAATGGCGAGTTTACATCAGAGAAAGGAAGTGATGCTTCTGAGGCTGTAAAACCTGCCAACAATTGTAATAATCAAAGTAACACAATACCCTCTTCTACAACCAACAATAGTAATAATCAAAGTAACACAATACCCTCTTCTACAGCCAACAATTGTAATAATCAAAGTAACACAATACCCTCTTCTTCAGGCCAATGGACATTGTAG 2337 0.4262 MPPAVMDPPLPESSSVPSLSSDAGSLGSAPESRRFGDLRGLQWRINLGVLPSSSIDDLRRATANSRRRYAGLRGRLLVDPHTPKDGSSSPDLVMDNPLSQNPDSTWSRFFRNAEMEKMVDQDLSRLYPEHGNYFQTPGCQGILRRILLLWCLRHPECGYRQGMHELLAPVLYVLQFDVECLSEVRKLYEDHFTDRFDDLFCQENDLSYSFDFRKSADSMEDEIDSNGNAMKIKSLDELDPRIQNIVLLSDAYGAEGELGVVLSEKFIEHDAYCMFDALMNGARGSIAMADFFSYSPLPGSHTGLPPVIEASAALYHLLSHVDSSLHGHLVDLGVEPQYFALRWLRVLFGREFSLSNLLIIWDEIFLSDNSKVEKHAEDNADSGFRIFNSSRGAFILAMAVAMMLHIRSSLLAAENPTTCLQRLLNFPENSNVEKLIEKAKSLQALALSTEISSSMPSFVEYHNQGKSAIARSRTLSSESISPKTPLNLVPDSYWEEKWRVVHKAEELKQDGVEKQVPTRKKGWTEKVKSNLKRTESDPSSSRIESGKKESKSPVRRNLLEDLSKELGFEEDTGKLCCHDNLSARVEEEQQEDGSEGSNNYSLEDRCLNPNTSSEENSPVISCPASPPNEASDHKNDYEKSSVGSNLSLDGINEASLGSPIDSPLPISDHPENGPQTPRSNNINNSAGNSTTHSKERKLNKFQWLWKFGRNNGEFTSEKGSDASEAVKPANNCNNQSNTIPSSTTNNSNNQSNTIPSSTANNCNNQSNTIPSSSGQWTL 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00749 778 Gene3D - 307 451 - -
Pumo4g00749 778 SMART tbc_4 25 414 IPR000195 -
Pumo4g00749 778 MobiDBLite consensus disorder prediction 13 27 - -
Pumo4g00749 778 MobiDBLite consensus disorder prediction 584 696 - -
Pumo4g00749 778 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 303 443 IPR035969 -
Pumo4g00749 778 MobiDBLite consensus disorder prediction 594 624 - -
Pumo4g00749 778 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 37 328 IPR035969 -
Pumo4g00749 778 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 33 439 - -
Pumo4g00749 778 MobiDBLite consensus disorder prediction 1 32 - -
Pumo4g00749 778 MobiDBLite consensus disorder prediction 512 556 - -
Pumo4g00749 778 MobiDBLite consensus disorder prediction 672 692 - -
Pumo4g00749 778 FunFam TBC1 domain family member 5 307 451 - -
Pumo4g00749 778 MobiDBLite consensus disorder prediction 77 97 - -
Pumo4g00749 778 MobiDBLite consensus disorder prediction 715 778 - -
Pumo4g00749 778 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 99 284 - -
Pumo4g00749 778 ProSiteProfiles TBC/rab GAP domain profile. 33 368 IPR000195 -
Pumo4g00749 778 MobiDBLite consensus disorder prediction 726 778 - -
Pumo4g00749 778 Pfam Rab-GTPase-TBC domain 116 201 IPR000195 -
Pumo4g00749 778 Pfam Rab-GTPase-TBC domain 268 369 IPR000195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00749 Pumo-Chr4 9748708 9753967 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00749 K18469 - gmx:100818700 1361.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00749 4 9748708 9753967 Pumo4g00749 4 9748708 9753967 ECH
Pumo4g00749 4 9748708 9753967 Pumo2g01587 2 29867583 29873458 PCT