Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00740 ATGGCCACCCTCGACCCAATCCAAAACGGCCTCTCTTCGGACAATCCCGACGCCGCTGAACCTCCCTCCACCACCGCCGACGACCCCGTTCCCGATGCCGCCTCCGCCGAGAAGCGGTGGCCGGGCTGGCCCGGCCACTGCGTGTTCCGCATCATCGTGCCGGTGCTCAAGGTCGGCAGCATCATCGGCCGCAAGGGGGAGCTCATCAAGAAAACCTGCGAGGAAACGAAAGCTCGCATTCGCGTCCTCGACGGCGCGGTCGGCACCCCCGATCGAATCGTACTCATATCAGGGAAGGAAGAGCCGGAGGCACCTCTTTCTCCTGCAATGGATGCTGTAATAAGGGTTTTTAAACGTGTCTCTGGGCTATCTGAAATTGATGCCGAGAGTAAAGCATCAGTGGTTGCATTTTGTTCCGTCCGTTTATTGGTGGCCTCAACACAGGCTATCAATTTGATTGGAAAGCAGGGTTCATTAATTAAATCTATACAGGAAAATACCGGTGCTTCTGTTAGAGTACTGTCTGGAGATGAGGTTCCCTTTTATGCTGCTGCGGATGAGAGGATTGTGGAACTGCAGGGAGAAGCCATGAAGGTCCTTAAGGCTTTAGAAGCAGTAGTTGGACACCTGAGGAAGTTTTTGGTTGATCATAGTGTTCTTCCCTTATTTGAGAAAACTTACAATGCAACAATCTCCCAAGAGCGCCAGGCAGATACTACCTGGGTTGACAAGCCATCACTGCATAGTGCTTCACAACCTAGCATTGTAACTGATATTCCTCTTTCAACAAAAAGGGATTCTCTCTTTGCTGACCGTGAAAGTCAGTTGGATTCATTGCTCCCTCCCTCCTCAATGTCAATATATGGGCAAGATTCTTCACTTTCTGGTCTTCGTTCTTCGGCTCTCAGTCGACCCGGTGCTCCTCCTATTGTTACAACGGTAATACAAACAATGCAAATACCGCTGTCCTATGCAGAGGACATCATTGGTATACAAGGGACTAATATTGAATACATTCGTCGTACTAGTGGAGCCATATTGACTGTTCAGGAGAGCCGGGTGCCTGATGAAATCATTGTGGAAATAAAAGGCACCTCATCTCAGGTTCAAACGGCGCAACAGTTGATTCAGGAAGTTATAAGTAATCACAAAGAACCTGTCGCTAGTAATTACAGCAGGTTAGATACAGGTCTGAGGTCTTCTTACCCTCAGTTGGGAAGTTCATCGTATTCCTCTTCTTCCCTGTCCTCGCAACCCTATAGCGGGTATGGATCTTCTGGTCTCGGAGGCTATAGTACTTTCAGACTTTGA 1311 0.4912 MATLDPIQNGLSSDNPDAAEPPSTTADDPVPDAASAEKRWPGWPGHCVFRIIVPVLKVGSIIGRKGELIKKTCEETKARIRVLDGAVGTPDRIVLISGKEEPEAPLSPAMDAVIRVFKRVSGLSEIDAESKASVVAFCSVRLLVASTQAINLIGKQGSLIKSIQENTGASVRVLSGDEVPFYAAADERIVELQGEAMKVLKALEAVVGHLRKFLVDHSVLPLFEKTYNATISQERQADTTWVDKPSLHSASQPSIVTDIPLSTKRDSLFADRESQLDSLLPPSSMSIYGQDSSLSGLRSSALSRPGAPPIVTTVIQTMQIPLSYAEDIIGIQGTNIEYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQTAQQLIQEVISNHKEPVASNYSRLDTGLRSSYPQLGSSSYSSSSLSSQPYSGYGSSGLGGYSTFRL 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00740 436 ProSiteProfiles Type-1 KH domain profile. 313 376 - -
Pumo4g00740 436 MobiDBLite consensus disorder prediction 1 20 - -
Pumo4g00740 436 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 40 101 IPR036612 GO:0003723
Pumo4g00740 436 Gene3D K Homology domain, type 1 311 386 IPR036612 GO:0003723
Pumo4g00740 436 ProSiteProfiles Type-1 KH domain profile. 46 113 - -
Pumo4g00740 436 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 37 406 - -
Pumo4g00740 436 Gene3D - 46 214 - -
Pumo4g00740 436 SMART kh_6 45 118 IPR004087 GO:0003676
Pumo4g00740 436 SMART kh_6 312 381 IPR004087 GO:0003676
Pumo4g00740 436 SMART kh_6 136 211 IPR004087 GO:0003676
Pumo4g00740 436 CDD KH-I_PEPPER_rpt1_like 46 114 - -
Pumo4g00740 436 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 133 218 IPR036612 GO:0003723
Pumo4g00740 436 Pfam KH domain 49 101 IPR004088 GO:0003723
Pumo4g00740 436 Pfam KH domain 140 206 IPR004088 GO:0003723
Pumo4g00740 436 Pfam KH domain 316 378 IPR004088 GO:0003723
Pumo4g00740 436 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 308 382 IPR036612 GO:0003723
Pumo4g00740 436 CDD KH-I_PEPPER_rpt2_like 139 211 - -
Pumo4g00740 436 MobiDBLite consensus disorder prediction 1 38 - -
Pumo4g00740 436 ProSiteProfiles Type-1 KH domain profile. 137 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00740 Pumo-Chr4 9666965 9672173 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00740 K21444 - gmx:100802089 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00740 4 9666965 9672173 Pumo4g00740 4 9666965 9672173 ECH
Pumo4g00740 4 9666965 9672173 Pumo2g01596 2 29991815 30001219 PCT