LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo2g01596	ATGGCCACCGGCGAACCACCTCAGAACGGCACTGCCAGAAACCTACTCCTGCTGGAAAATGCCTCCGCCGCACAACCGCCCATCGAGACGGAAGCTGACACCACCGTGGCGTCCACTCCGCCGGAGAAGAGATGGCCGGGGTGGCCAGGGGACTGCGTGTTCCGACTCATCGTGCCGGTGGGGAAAGTGGGAAGCATCATTGGGCGTAAGGGAGAACTCATAAAGAAGATGTGCGAAGAAACTCGATCTCGCATTCGCGTTCTCGACGCTCCTCCTGGCACTCCTGATCGAATTGTACTTGTATCCGGGAAGGAAGAGCCAGAGGCAGCTCTTTCCCCCGCAATGGATGCTGTAATAAGGGTATTCAAGCGTGTCTCTGGGTTATCTGAAACTGATGCTGAGAATAAAGAATCTGCTGCTGGTCTTGCATTTTGTTCCATCCGTTTATTGGTGCCATCAACACAGGCTATCAGTTTAATTGGAAAGCAAGGCTCGTTAATAAAATCTATTCAGGAGAATACCAGTGCTTCTGTTAGAGTGCTGTCAGGAGATGAGGTGCAATTTTATGCTACTGCGGATGAGAGGATTGTGGAAATTCAGGGAGAAGCCTTGAAGGTCCTTAAAGCTCTGGAAGCAGTAGTTGGCCATCTGAGGAAATTTTTGGTTGATCATAGCGTTCTTCCCCTATTTGAGAAAACTTACAATGCGCCAATCTCACAAGACCGTCAAGCAGAGACCTGGTCTGACAAGTCATTACTGCATACTACTTCACGTACTAGCATATTTGCCGACATTCCTCTTTCAACCAAAAGGGATTCTGTCTTTGCTGACCGTGAAAGTCAATTGGACTCGTTACTCCCTTCCTCCACTATGTCTCTCTATGGGCAGGATTCTTCACTTTCAGGTGTTCGTTCTTCAGCTCTTGGCCGTGTTGGTGCTCCTTTTGTTACTACGGTAATACAAATGCAAATACCACTATCGTATGCGGAAGACATCATTGGTATTCACGGGACTAATATTGATTACATTCGCCGTAGCAGTGGAGCCATATTGACTGTGCAAGAGAGCAGGGTGCCTGATGAAATCGTTGTTGAAATAAAAGGCACCTCATCTGAGGTTCAAACTGCACAACAATTGATTCAGGATGTTATAAGCAGTCACAAAGAACCTGTCACTAGCAGTTATGGCAGGCTAGATGCAGGTCCAAGGTCTTCATACTCTCAGTTGGGCACTACATCACGCCTCCCATCTTCATTGTCCTCACAACCATACACAAGTTATGGAGCTTCTGGTTCAGGAGACTACAGTACTTTCTGGCTTTAA	1323	0.4777	MATGEPPQNGTARNLLLLENASAAQPPIETEADTTVASTPPEKRWPGWPGDCVFRLIVPVGKVGSIIGRKGELIKKMCEETRSRIRVLDAPPGTPDRIVLVSGKEEPEAALSPAMDAVIRVFKRVSGLSETDAENKESAAGLAFCSIRLLVPSTQAISLIGKQGSLIKSIQENTSASVRVLSGDEVQFYATADERIVEIQGEALKVLKALEAVVGHLRKFLVDHSVLPLFEKTYNAPISQDRQAETWSDKSLLHTTSRTSIFADIPLSTKRDSVFADRESQLDSLLPSSTMSLYGQDSSLSGVRSSALGRVGAPFVTTVIQMQIPLSYAEDIIGIHGTNIDYIRRSSGAILTVQESRVPDEIVVEIKGTSSEVQTAQQLIQDVISSHKEPVTSSYGRLDAGPRSSYSQLGTTSRLPSSLSSQPYTSYGASGSGDYSTFWL	440

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo2g01596	440	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	44	106	IPR036612	GO:0003723
	Pumo2g01596	440	PANTHER	KH DOMAIN CONTAINING RNA BINDING PROTEIN	41	402	-	-
	Pumo2g01596	440	Gene3D	K Homology domain, type 1	316	389	IPR036612	GO:0003723
	Pumo2g01596	440	MobiDBLite	consensus disorder prediction	391	432	-	-
	Pumo2g01596	440	ProSiteProfiles	Type-1 KH domain profile.	144	213	-	-
	Pumo2g01596	440	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	314	386	IPR036612	GO:0003723
	Pumo2g01596	440	ProSiteProfiles	Type-1 KH domain profile.	317	380	-	-
	Pumo2g01596	440	Pfam	KH domain	147	213	IPR004088	GO:0003723
	Pumo2g01596	440	Pfam	KH domain	54	107	IPR004088	GO:0003723
	Pumo2g01596	440	Pfam	KH domain	320	382	IPR004088	GO:0003723
	Pumo2g01596	440	Gene3D	-	51	221	-	-
	Pumo2g01596	440	SMART	kh_6	50	123	IPR004087	GO:0003676
	Pumo2g01596	440	SMART	kh_6	143	218	IPR004087	GO:0003676
	Pumo2g01596	440	SMART	kh_6	316	385	IPR004087	GO:0003676
	Pumo2g01596	440	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	142	225	IPR036612	GO:0003723
	Pumo2g01596	440	CDD	KH-I_PEPPER_rpt1_like	51	119	-	-
	Pumo2g01596	440	ProSiteProfiles	Type-1 KH domain profile.	51	118	-	-
	Pumo2g01596	440	CDD	KH-I_PEPPER_rpt2_like	148	218	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo2g01596	Pumo-Chr2	29991815	30001219	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo2g01596	K21444		-	gmx:100815466	762.681

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo2g01596	2	29991815	30001219	Pumo2g01596	2	29991815	30001219	ECH
	Pumo4g00740	4	9666965	9672173	Pumo2g01596	2	29991815	30001219	PCT