Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00735 ATGCGCTCAGGAGTTTGTGCATTACAGCAGACCCTCTCAGCTGAGGCTGCTTCAGTGTTGAAGCACTCTCTGGGGTTGGCTCGGAGGAGGGGCCATGCACAGGTCACTCCTCTGCATGTGGCTGCCACTTTGCTCAGCCTAAGAGGCAGTTCCTTGAGAAGGGCCTGTCTCAAGTCTCAGCCTCACCAAACTTCTCATCCTCTCCAATGCAGGGCCCTTGAGTTGTGCTTCAATGTGGCCCTCAACAGGCTCCCAACAACACCTGCTCCTTTGATCCACACTCAGCCTTCTCTCTCCAATGCTCTCATTGCTGCATTGAAGAGAGCTCAGGCTCACCAGAGAAGAGGCTGCATAGAGCAGCAGCAACCACAGCCTCTCCTCACCATCAAGGTTGAGCTGGAACAGCTCATCATATCCATCCTTGATGACCCTAGTGTTAGCAGGGTTATGAGAGAGGCTGGTTTCTCCAGCACTGCTGTTAAGAACAACATAGAGGATTCTTCACCCCATTCTGTCTTTCAGTGTTACAATAGTTCTGGTGGTGTGTTTTCTTCTCCTTGTTCACCTTCTGCCAGTGAGAGCCATAGGGAAACAGCCACCAACCCCACCAATTTCAGGCACACTCATCATTTCTTAACTTCTTATGTTTCTGACTTCAGCCCTTCACTTCTCTTTTCTCCTCCAAAGAATGCACCAGTGTGTTCCATCACTGGTGCAGCTTCTTCTAGTAAGGATGATATCAGGCTTGTTCTGGATATCCTCTTGAGGAAGAAGAAAAAGAACACTGTGATTGTTGGTGACTCAGTGTCATTAACTGAAGGCCTTGTGGGGGAGCTAATGGGGAGGTTAGAAAGATCAGAAGTGCCTGATGAGTTAAAGTCAACCCATTTTATCAAATTCCAATTTCCACCTGTTTCTTTGAGTTGCATGAAGAGAGATGAAGTTGAGATGAAACTCTTGGAACTGAAAAGGAAGGTGGATTCCATTGCATCAGGAGGAGGGGGTGGCATTTTTTATATTGGAGACCTGAAGTGGACAGTGGAAGAGGCAAGTTTGAGTGAAAAAGAGGAAGGGTCCCCAGATGGAGAAGTTTCTTGTTATAATCCTGTTGATCATTTAGTTTCAGAAATAGGAAAGTTATTCTGTGACTGTGGAACCTCAAATAATGCTAAGGTGTGGCTCATGGCCACTGCTAGCTATCAAACATACATGAGGTGTCAAATGAGGCAACCCCCTCTTGAGAAGCAATGGGCTCTTCAGGCTGTTCCTGTTCCATCAGGTGGACTTGGCTTGAGTCTTCATGCTCCCAGTGTCCTTGATCCAAAGATGACCATCTCCAAAAACCAATCTCATGATCCTGAAACAAAGCCCTTTGGTAACATGGAGCAGCAGGATAAGCTCAATTGTTGTGAAGAATGTGCCTCCAATTATGAAAAAGAAGCCCAATTTCTCAGGCCAGACCAAAAGAAAATTTTGCCTTTCTGGCTTCAGTCTCATAACACAGAAGACCAAAAGAAGGATGAATTAGTCCAATTGAAAAGAAAATGGAATAGACTATGCCACTGTCTCCACCAAAGCAAACAGCCTCAGAACCAATGGAACTGGAACAACAGTTATAATTCACCAAGCTCTATATCCTTTGCCAACAATGCTACACATGGCTCCACCTCCAAACTTGTCCCTCGATTCCGACGCCAACAATCATGCATCATTGAGTTCAATTTCGGCAACAAAAGGGAAGCAACAGAGCCAGTCTTGGATTCCCTTGAGAGCATGGAGGGTAAAGAAGTCAAGACTACTCTTGCTCTTGGCAATGGTGGTTCAGGTGAGTCGACGGTGGGGGATATAACTGATACAACACTGCAACGAGCTCATATTTGTAAACTATTGCAGGAGAATGTGCCATGGCAGTCTGAGACTGTTCCTTCAATAGCAGAAGCCTTGATTGATTCCAAATCAGCAAAGCAAAGTAACAACATTACTTGGTTACTTGTGCAAGGCAATGACACCATTGGGAAAAGAAGGTTGGCACTTGCAATTGCAGAATCAGTTTTTGGCTCCACTGATGTGCTCCTTCACTTTGACATGCTGAAGAGAGAGTCTTCAATAGCCCCATTTTCTGAAATGCTGGCAGAAGCACTGAAAACCCACCAACAGCTTGTGGTGCTAATAGAAAATGTTGACTTTGTTGATGCCCAGTTCAAGAAATTCCTCTCAGATGGATTTGAAACAGGAAAGTTTGGAAATTCCACAGAAGAGAACTCAAGCCAAGTAATATTCATATTGACAAATGGTGGATGTGGATCCACTAGCATTGAGGAGCAGAATGAGGACTTGGCTATGAGGTTGGTGTGGCAGGTCAGTGAAACCAAGCCTAACTTAGAGACACCATCTGTCGCAACCGGGATCGTGGAGCCTTGTTTAGGCCACAAGAGAAGAGCTGAACTTGATTTATTTTCTAACACCAACAGTTTTCAAGGGAGCAAGAAGAAAGAGTTTTCAAGACAAACAAGCTTTAACACTCTTGATCTGAACATGAAAGCTGATGAAGAGGATAAAGCAGGAGAGAGTAGCCCCATTTCAAGTGATTTGACTGGAGAAACTATAGCTGATCCACTGAACCAAAACGGATTTCTTGACTCAATTGGGAGCCGGTTTGAGTTTAACTCAAGTCCAGTTAAGGACAGAGAGATGGCAGAGTTGTTTTTGTGTAAGATCAAAGGGTCTTTTGAGGAGGTTTGTGGGAAGAAATGTTTGGAGAATTTAAGTGTAGATGAGAGGGTGATTGAGGATGTGCGTGTTGGGTGTGGTTATTTTAGCAACAGCTTGTTTGAGAAATGGCTGAAAGACGTTTTTGAAAGCAGTTTAGAAACAGTTAACTTTGGAGGGAAGGAGGGTATACTTTTTAGACTTTCTTGGGGTGGTAAAGGAGATAGAAAATCGGATAGTGGGTTCATGAGTTCTTCTCTGCCCAAGAGTATCCAAGTTAATTACTTCATAGAGTGA 3006 0.4451 MRSGVCALQQTLSAEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRGSSLRRACLKSQPHQTSHPLQCRALELCFNVALNRLPTTPAPLIHTQPSLSNALIAALKRAQAHQRRGCIEQQQPQPLLTIKVELEQLIISILDDPSVSRVMREAGFSSTAVKNNIEDSSPHSVFQCYNSSGGVFSSPCSPSASESHRETATNPTNFRHTHHFLTSYVSDFSPSLLFSPPKNAPVCSITGAASSSKDDIRLVLDILLRKKKKNTVIVGDSVSLTEGLVGELMGRLERSEVPDELKSTHFIKFQFPPVSLSCMKRDEVEMKLLELKRKVDSIASGGGGGIFYIGDLKWTVEEASLSEKEEGSPDGEVSCYNPVDHLVSEIGKLFCDCGTSNNAKVWLMATASYQTYMRCQMRQPPLEKQWALQAVPVPSGGLGLSLHAPSVLDPKMTISKNQSHDPETKPFGNMEQQDKLNCCEECASNYEKEAQFLRPDQKKILPFWLQSHNTEDQKKDELVQLKRKWNRLCHCLHQSKQPQNQWNWNNSYNSPSSISFANNATHGSTSKLVPRFRRQQSCIIEFNFGNKREATEPVLDSLESMEGKEVKTTLALGNGGSGESTVGDITDTTLQRAHICKLLQENVPWQSETVPSIAEALIDSKSAKQSNNITWLLVQGNDTIGKRRLALAIAESVFGSTDVLLHFDMLKRESSIAPFSEMLAEALKTHQQLVVLIENVDFVDAQFKKFLSDGFETGKFGNSTEENSSQVIFILTNGGCGSTSIEEQNEDLAMRLVWQVSETKPNLETPSVATGIVEPCLGHKRRAELDLFSNTNSFQGSKKKEFSRQTSFNTLDLNMKADEEDKAGESSPISSDLTGETIADPLNQNGFLDSIGSRFEFNSSPVKDREMAELFLCKIKGSFEEVCGKKCLENLSVDERVIEDVRVGCGYFSNSLFEKWLKDVFESSLETVNFGGKEGILFRLSWGGKGDRKSDSGFMSSSLPKSIQVNYFIE 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00735 1001 Gene3D - 611 798 IPR027417 -
Pumo4g00735 1001 Pfam Clp amino terminal domain, pathogenicity island component 26 53 IPR004176 -
Pumo4g00735 1001 Pfam Clp amino terminal domain, pathogenicity island component 131 166 IPR004176 -
Pumo4g00735 1001 SUPERFAMILY Double Clp-N motif 12 165 IPR036628 -
Pumo4g00735 1001 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 967 - -
Pumo4g00735 1001 ProSiteProfiles Clp repeat (R) domain profile. 8 170 IPR004176 -
Pumo4g00735 1001 Gene3D - 9 168 IPR036628 -
Pumo4g00735 1001 FunFam protein SUPPRESSOR OF MAX2 1 9 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00735 Pumo-Chr4 9579412 9583587 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00735 - - gmx:100814376 1772.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00735 4 9579412 9583587 Pumo4g00735 4 9579412 9583587 ECH
Pumo4g00735 4 9579412 9583587 Pumo2g01601 2 30101530 30105634 PCT