Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00689 ATGGCGAGGCTGCTTCGTAACACTTCCCTTATCACACGCTCCCTATTCGTCCCTAAGGGTTTTAAACTAGGAGTATTTGGCTCTTCTCAGATTTTGAGCTTTTCATCTAAAGGTAGAAGGCGCTCTAAATCTGATGGAAGTGACTCAGGTGAAGAGAACATGTCTAAGAAAGAGTTGGCCCTTCAACAAGCTCTTGATCAGATCACTTCCGCATTTGGAAAGGGATCCATCATGTGGCTTGGTCGTTCTGTCTCACCAAAAAATGTACCTGTTGTGTCTACTGGTTCTTTTGCTCTTGATGTAGCACTAGGAATTGGTGGTCTTCCGAAGGGACGTGTTGCGGAAATATATGGTCCAGAGGCTTCTGGAAAAACAACTCTTGCTTTACATGTGATTGCAGAGGCACAGAAGCAAGGAGGCTATTGCGTCTTTGTTGATGCCGAGCATGCCCTTGATAAGACTCTTGCAGAGTCTATTGGTGTGAATACGGCAAACTTGCTTCTCTCCCAACCTGATTGTGGGGAACAAGCACTAAGTCTTGTGGATACCTTAATCCGTAGTGGTTCAGTTGATGTAATTGTTGTTGACAGTGTGGCTGCTCTTGTTCCTAAAGGTGAGCTTGATGGTGAAATGGGTGATGCTCACATGGCAATGCAAGCTAGGTTGATGAGCCAGGCTCTTCGAAAATTGAGCCACGCCTTGTCACTTTCTCAATGTATATTGATTTTTATAAACCAGGTGAGGTCAAAGATTTCAACTTTTGGGGGATTTAGTGGGCCTACTGAAGTTACTTGTGGTGGTAATGCATTGAAATTCTATGCTTCAGTGCGGCTAAATATCAAGAGAATAGGGTTTGTCAAGAAGGGTGAAGAGATTTTAGGAAGTCAGGTTCTTGTCAAGGTTGTGAAGAACAAGCTTGCCCCTCCATTTAAAACTGCTGAGTTTGAGCTTCAATTTGGCAAGGGTATATGTAAAGAAACGGAGATTATAGATTTGAGCGTAAAACACAAACTCATCTTAAAGGCTGGTGCAATGTATTACTATAACGAACAGAGTTTCCGTGGTAAGGAAGCCCTAAAGAGTTTTCTGGCTGAGAATCGAAGTGCATTAGAAGAACTTGAAATGAGGCTCAGGGAGAAGCTTCTTAATGCTGAGACAGAAAAGACGCAAGAGTCAGATGTAATTAATGGAGATGTTACAGAAGAAATTGCAACAGTTGATTCTACTAATGGAGATGTTACAGAAAAAATTGCAACAGTTGATTCTACTGACGAAGAAGCTGCAGCTATTGTTGAAGCATGA 1302 0.424 MARLLRNTSLITRSLFVPKGFKLGVFGSSQILSFSSKGRRRSKSDGSDSGEENMSKKELALQQALDQITSAFGKGSIMWLGRSVSPKNVPVVSTGSFALDVALGIGGLPKGRVAEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDKTLAESIGVNTANLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHALSLSQCILIFINQVRSKISTFGGFSGPTEVTCGGNALKFYASVRLNIKRIGFVKKGEEILGSQVLVKVVKNKLAPPFKTAEFELQFGKGICKETEIIDLSVKHKLILKAGAMYYYNEQSFRGKEALKSFLAENRSALEELEMRLREKLLNAETEKTQESDVINGDVTEEIATVDSTNGDVTEKIATVDSTDEEAAAIVEA 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00689 433 Hamap Protein RecA [recA]. 57 384 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo4g00689 433 ProSitePatterns recA signature. 269 277 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Pumo4g00689 433 SMART AAA_5 110 284 IPR003593 GO:0016887
Pumo4g00689 433 MobiDBLite consensus disorder prediction 37 56 - -
Pumo4g00689 433 MobiDBLite consensus disorder prediction 38 55 - -
Pumo4g00689 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 323 IPR027417 -
Pumo4g00689 433 NCBIfam recombinase RecA 57 379 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo4g00689 433 Pfam recA bacterial DNA recombination protein 60 323 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo4g00689 433 CDD RecA 88 325 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo4g00689 433 Gene3D - 87 391 IPR027417 -
Pumo4g00689 433 PRINTS RecA protein signature 299 328 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo4g00689 433 PRINTS RecA protein signature 218 247 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo4g00689 433 PRINTS RecA protein signature 146 175 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo4g00689 433 PRINTS RecA protein signature 266 294 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo4g00689 433 PRINTS RecA protein signature 180 209 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo4g00689 433 PRINTS RecA protein signature 352 369 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo4g00689 433 ProSiteProfiles RecA family profile 2. 255 328 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Pumo4g00689 433 Coils Coil 363 390 - -
Pumo4g00689 433 FunFam Recombinase RecA 86 386 - -
Pumo4g00689 433 ProSiteProfiles RecA family profile 1. 88 247 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Pumo4g00689 433 PANTHER RECA 34 392 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo4g00689 433 SUPERFAMILY RecA protein, C-terminal domain 325 380 IPR023400 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00689 Pumo-Chr4 8945860 8951549 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00689 K03553 - gmx:100781271 751.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00689 4 8945860 8951549 Pumo4g00689 4 8945860 8951549 ECH
Pumo4g00689 4 8945860 8951549 Pumo2g01642 2 30979456 30990513 PCT