Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01642 ATGACCAACAACAACGACAACATCGCCATGACAGATCTCACTTCTGCCCTCAACGAAGAGAATCGCGCCGACCTAGTCAGTGCTCTCAAGAGCAAGATACAGAGTCTGGCTGGGCAGCATTCTGATGTTCTAGAGAGTCTATCCCCTAATGTCAGGAAGCGTGTTGAATCTCTCAGAGAGATTCAGGGTAAACATGATGAACTAGAGGCGGACTTCTTCAAGGAGAGAGAAGCTCTTGAAGCCAAGTACCAAAAATTGTATCAGCCATTGTATACAAAGCGCTATGAAATCGTAAATGGTGTTACTGAAGTCGAAGGGGCAGCAAATGAAACAACAGATGAATCAGAAGAGGATAAAGAAGAGAAAGGAGTGCCTTCTTTTTGGCTCAATGCAATGAAAAATAATGATGTGTTAGCTGAAGAGATTTCAGAGCGTGACGAAGGTGCTCTCAAGTTTCTTAAAGATATCAAGTGGATCAGGATAGAAAATCCTAAAGGATTCAAGCTTGAGTTCTTCTTTGATACCAATCCTTACTTTTCAAATACTGTCTTGACAAAAACATATCATATGATTGATGAGGATGAACCTATATTGGAGAAAGCAATTGGGACGGACATTGAATGGTACCCAGGAAAATGCTTGACTCAGAAGGTTTTGAAGAAAAAGCCTAAGAAGGGTTCAAAGAATGCTAAACCAATTACCAAAACTGAAATCTGTGAAAGCTTCTTCAATTTTTTCAAACCACCAGAAGTCCCTGAAGATGATGATGACATTGATGAAGATTTGGCTGAGGAACTTCAGAATCAGATGGAACAAGATTATGACATTGGGTCAACAATAAGAGACAAAATTATCCCTCATGCTGTATCATGGTTTACTGGGGAGGCAGTTCAGGGAGACGAGTTTGAAGACCTGGAGGATGATGAGGATGAAGATGAAGATGAGGATGATGAAGAGGAGGATGAAGACGAAGATGACGATGACGACGATGAAGAGGAGGAAGAAACTAAGACTAAAAAGAAGAAGAGTGGAAGGGCACAGGCTGGTGATGGTCAGCAGGGTGAGCGACCTCCAGAGTGCAAGCAGCACGCTTTTGACTTTAAACCAGGAGTATTGGGCACGTCTCAAGTTTTGAGCTTTTCAACTCGTAAAAGGAGGTCTAAATCAGATGGAAGTGACTCAGGTGAAGAGAACATGTCTAAGAAAGATTTGGCCCTACAACAAGCTATTGATCAGATCACCTCTGCATATGGAAAGGGATCTATCATGTGGCTTGGTCGTTCTGTGGCTCCTAAAAATATACCTGTGGTGTCTACTGGTTCTTTTGCTCTGGATATAGCACTTGGGGTCGGAGGTCTTCCAAAGGGGCGTGTTGTGGAAATATTTGGTCCAGAGGCTTCTGGGAAAACAACTCTTGCTTTGCATGTGATTGCGGAAGCACAAAAGCTAGGAGGCTACTGTGCCTTTGTTGATGCTGAGCATGCACTTGATAAGACACTTGCAGAGTCAATTGGTGTAGATACTAAGAACTTGCTTCTCTCACAACCAGATTGTGGTGAACAAGCACTTAGCCTTGTGGATACCTTAATCCGGAGTGGTTCAGTTGATGTAATTGTTGTTGACAGTGTAGCTGCTCTTGTTCCTAAAGGCGAGCTTGATGGTGAGATGGGTGATGCTCACATGGCAATGCAGGCTAGGTTGATGAGCCAGGCTCTTCGGAAATTGTGCCACTCCCTGTCACTTTCACAGTGTATATTGGTTTTTATAAACCAGGTGAGGTCAAAGATTTCTACTTTTGGGGGATTTGGTGGGCCCACTGAAGTTACTTGTGGTGGTAATGCTCTGAAGTTCTATGCTTCTGTGCGGCTAAATATCAAAAGAGTTGGGCTTGTCAAGAAGGGTGAAGAGACTTTAGGAAGCCAGGTTCTTGTCAAGGTTGTGAAGAACAAGCATGCCCCTCCATTTAAAACTGCACAGTTTGAGCTTGAGTTCGGCAAAGGTATAAGTAGAGAAGCAGAGCTTATAGAGTTGAGCGTAAAATATAAAATCATAAAGAAGAGTGGTTCATTTTTTGAATATAATGGCCGGAATTTCCATGGCAAGGATGCTCTAAAGAGGTTCCTGGCAGAGAGCGATGGTGCACAAGAATTAGCAACAAAGCTCAGGGAGAAGATTCTTAATGCTGAGCCAGAACTGGAGCCAGAGGAGCAGGCAATGATTGGAGATGTTATGGAACTAATGGAAGAAATGGCATCGCTTGATTCCACTGATGAAGCAGCTGCTCCTGCTCCTGCTGCTGTTGCTGTAGAAGCATAA 2316 0.4335 MTNNNDNIAMTDLTSALNEENRADLVSALKSKIQSLAGQHSDVLESLSPNVRKRVESLREIQGKHDELEADFFKEREALEAKYQKLYQPLYTKRYEIVNGVTEVEGAANETTDESEEDKEEKGVPSFWLNAMKNNDVLAEEISERDEGALKFLKDIKWIRIENPKGFKLEFFFDTNPYFSNTVLTKTYHMIDEDEPILEKAIGTDIEWYPGKCLTQKVLKKKPKKGSKNAKPITKTEICESFFNFFKPPEVPEDDDDIDEDLAEELQNQMEQDYDIGSTIRDKIIPHAVSWFTGEAVQGDEFEDLEDDEDEDEDEDDEEEDEDEDDDDDDEEEEETKTKKKKSGRAQAGDGQQGERPPECKQHAFDFKPGVLGTSQVLSFSTRKRRSKSDGSDSGEENMSKKDLALQQAIDQITSAYGKGSIMWLGRSVAPKNIPVVSTGSFALDIALGVGGLPKGRVVEIFGPEASGKTTLALHVIAEAQKLGGYCAFVDAEHALDKTLAESIGVDTKNLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLCHSLSLSQCILVFINQVRSKISTFGGFGGPTEVTCGGNALKFYASVRLNIKRVGLVKKGEETLGSQVLVKVVKNKHAPPFKTAQFELEFGKGISREAELIELSVKYKIIKKSGSFFEYNGRNFHGKDALKRFLAESDGAQELATKLREKILNAEPELEPEEQAMIGDVMELMEEMASLDSTDEAAAPAPAAVAVEA 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01642 771 Coils Coil 302 322 - -
Pumo2g01642 771 ProSiteProfiles RecA family profile 1. 433 592 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Pumo2g01642 771 SUPERFAMILY RecA protein, C-terminal domain 669 723 IPR023400 -
Pumo2g01642 771 Pfam recA bacterial DNA recombination protein 405 669 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo2g01642 771 Pfam Nucleosome assembly protein (NAP) 53 295 IPR002164 GO:0005634|GO:0006334
Pumo2g01642 771 Hamap Protein RecA [recA]. 402 729 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo2g01642 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 406 668 IPR027417 -
Pumo2g01642 771 SMART AAA_5 455 629 IPR003593 GO:0016887
Pumo2g01642 771 ProSitePatterns recA signature. 614 622 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Pumo2g01642 771 MobiDBLite consensus disorder prediction 294 402 - -
Pumo2g01642 771 FunFam Nucleosome assembly protein11 119 295 - -
Pumo2g01642 771 FunFam Recombinase RecA 431 729 - -
Pumo2g01642 771 ProSiteProfiles RecA family profile 2. 602 673 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Pumo2g01642 771 FunFam Nucleosome assembly protein 1-like 1 45 103 - -
Pumo2g01642 771 PRINTS RecA protein signature 491 520 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo2g01642 771 PRINTS RecA protein signature 644 673 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo2g01642 771 PRINTS RecA protein signature 563 592 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo2g01642 771 PRINTS RecA protein signature 525 554 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo2g01642 771 PRINTS RecA protein signature 611 639 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo2g01642 771 PANTHER RECA 382 735 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo2g01642 771 MobiDBLite consensus disorder prediction 383 400 - -
Pumo2g01642 771 CDD RecA 433 670 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo2g01642 771 Gene3D - 45 104 - -
Pumo2g01642 771 NCBIfam recombinase RecA 402 724 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo2g01642 771 MobiDBLite consensus disorder prediction 299 333 - -
Pumo2g01642 771 SUPERFAMILY NAP-like 30 294 IPR037231 -
Pumo2g01642 771 Gene3D Nucleosome assembly protein 119 295 - -
Pumo2g01642 771 Gene3D - 432 730 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01642 Pumo-Chr2 30979456 30990513 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01642 K03553 - gmx:100798983 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01642 2 30979456 30990513 Pumo2g01642 2 30979456 30990513 ECH
Pumo4g00689 4 8945860 8951549 Pumo2g01642 2 30979456 30990513 PCT