Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00645 ATGATTCTCATTATCTCCCTCATTTTTTCTCTTCTCTCTTTCTCCCATGCTTCTGTCCTAGATTTCTGTGTTGCAGATTATGCAGGTCCTATTGGCCCTGCAGGATATTCCTGCAAGAAGCCTGCAAAGGTCACAGCAGATGATTTCGCTTACAGTGGCCTTGGAGTTGCTGGTAACACCTCAAACATTATCAAAGCTGCAGTGACCCCTGCATTTGATGCTCAGTTTGCTGGTCTCAATGGCCTTGGCATTTCCGCGGCCCGTTTGGACTTAGCAGCAAGTGGAGTTATACCACTTCACACTCATCCTGGGGCTTCAGAATTACTTGTTGTAATAGAAGGGAGCATCCTGGCTGGATTCATTTCTTCTGCCAACACTGTCTACCTCAAAACTCTTAAGAAGGGGGATGTTATGGTATTCCCTCAAGGCTTGTTGCACTTCCAAATCAATGCAGGTAAATCTTCAGCCCTGGCAATTGTAAGCTTCAGTAGCTCCAATCCTGGTCTACAAATTCTGGACTTTGCTTTGTTCAAAAGTAATTTCCCCACACCATTGATAGTAGAAACCACTTTCCTTGATGCTGCTCTGGTGAAGAAGCTTAAGGGTGTTCTTGGAGGCTCAGGCTAA 627 0.453 MILIISLIFSLLSFSHASVLDFCVADYAGPIGPAGYSCKKPAKVTADDFAYSGLGVAGNTSNIIKAAVTPAFDAQFAGLNGLGISAARLDLAASGVIPLHTHPGASELLVVIEGSILAGFISSANTVYLKTLKKGDVMVFPQGLLHFQINAGKSSALAIVSFSSSNPGLQILDFALFKSNFPTPLIVETTFLDAALVKKLKGVLGGSG 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00645 208 CDD cupin_OxOx 15 204 IPR001929 GO:0030145
Pumo4g00645 208 Gene3D Jelly Rolls 16 207 IPR014710 -
Pumo4g00645 208 SUPERFAMILY RmlC-like cupins 19 202 IPR011051 -
Pumo4g00645 208 Pfam Cupin 54 182 IPR006045 -
Pumo4g00645 208 ProSitePatterns Germin family signature. 95 108 IPR019780 GO:0030145
Pumo4g00645 208 FunFam Auxin-binding protein ABP19a 16 207 - -
Pumo4g00645 208 PRINTS Germin signature 130 150 IPR001929 GO:0030145
Pumo4g00645 208 PRINTS Germin signature 163 178 IPR001929 GO:0030145
Pumo4g00645 208 PRINTS Germin signature 100 120 IPR001929 GO:0030145
Pumo4g00645 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 13 199 - -
Pumo4g00645 208 SMART Cupin_1_3 52 198 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00645 Pumo-Chr4 8492281 8493358 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00645 1 207 Miscellaneous Gene Families AT5G20630 70.192 2.70e-99 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00645 - - gmx:100800387 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00645 4 8492281 8493358 Pumo2g01693 2 31841583 31842722 PCT