Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00527 ATGGCTTCCATATCTCTCTCCTTTTCTTCTTCCATGGTTCCCTCTCCAATTCCCCACGATAAATCCAACAAAACCCACACCCAAAATCCCACCTTTCCTCTCATCCGCTTCGCCATTTCAGCTCCCGCTGTCAAAAAGCGACACTGGAAGAAAGGCGAGTTTCCTGGTACTTCCCAAACATCGTTCTCCGACACTCCGAGGAAGACCCCCCTTAAGAACCTTAAGAAGAAATTGGACAAAAAGAACAATGCCAAGGCATGGGTCAACACTGTCACCGAATCCTTATCCGAACGCATTGACAAGAAACAGTGGCTTCAGGCCCTCGAGGTATTTGATATGCTTAGAGAACAAACCTTTTACCAACCCAAAGAAGGGACTTACATGAAACTCATTGTGTTGCTTGGAAAATCTGGTCAACCCCACCGTGCCCATCAGCTTTTTACCACAATGATTGAAGAGGGTTTAGAACCTACTCCTGAACTGTACACGGCGTTGCTTGCTGCGTATTGCAGGAGCAACATGATTGATGAGGCGTTTTCAGTTCTTAATGAGATGAAGAAGCTTCCTCTTTGCCAGCCCGATGTTTTCACTTATAGTACCTTGATCAAAGTTTGTGTGGATGCTTTCAAATTTGATTTGGTTGAATTGCTGTATGAAGAAATGGCTGAAAGATCTATCACACCAAACACGGTCACTCAAAACATAGTTTTGAGTGGTTATGGCAAGGCGGGGAAGTTTGATCAGATGGAGAAAGTGCTGTCGAGTATGCTGGAGAGCACTACATGCAAGCCTGATGTTTGGACAATGAACACAATTATCAGTGTCTTTGGTAACATGGGTCAGATTGATATGATGGAAAAATGGTATGAAAAATTCCGTTATTTTGGGATAGAACCTGAGACACGCACTTTTAATATTTTGATTGGTGCCTATGGGAAGAAAAGAATGTATGACAAAATGTCATCTGTTATGGAGTATATGCGTAAGTTGCAATTTCCGTGGACGACCTCTACTTATAACAATGTGATTGAGGCATTTGCAGATGCAGGTGATGCGAAGCACATGGAGTGTACATTTGATCAGATGCGTGCTGAGGGTATGAAAGCAGATACCAAAACTTTCTGCTGCCTTATCAATGGTTATGCAAATGCTGGTCTCTTCCATAAAGTAATTAGCAGTGTTCGCTTGGCTGGAAAGCTCGAGATACCTGAGAATATCGCCTTTTATAATGCAATCTTATCTGCATGTACAAAGGCAGAGGATTTGATGGAAATGGAGAGAGTTTTCAAGCGTATGAAAGATAGCCAATGTCAGCCAGACGATACAACATACGCGATCATGATTGAGGCATATAGAAAAGAGGGTATGAATGACAAGATATACTATTTGGAGCAGGAAAAGCAGATGATGATGACTGATGATAAAAAAGTGAGCCAGTTTGAGAATGAAATCTTTAGTTGA 1461 0.4216 MASISLSFSSSMVPSPIPHDKSNKTHTQNPTFPLIRFAISAPAVKKRHWKKGEFPGTSQTSFSDTPRKTPLKNLKKKLDKKNNAKAWVNTVTESLSERIDKKQWLQALEVFDMLREQTFYQPKEGTYMKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPELYTALLAAYCRSNMIDEAFSVLNEMKKLPLCQPDVFTYSTLIKVCVDAFKFDLVELLYEEMAERSITPNTVTQNIVLSGYGKAGKFDQMEKVLSSMLESTTCKPDVWTMNTIISVFGNMGQIDMMEKWYEKFRYFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADAGDAKHMECTFDQMRAEGMKADTKTFCCLINGYANAGLFHKVISSVRLAGKLEIPENIAFYNAILSACTKAEDLMEMERVFKRMKDSQCQPDDTTYAIMIEAYRKEGMNDKIYYLEQEKQMMMTDDKKVSQFENEIFS 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00527 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
Pumo4g00527 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 264 IPR002885 -
Pumo4g00527 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 123 157 IPR002885 -
Pumo4g00527 486 Pfam PPR repeat 234 259 IPR002885 -
Pumo4g00527 486 Pfam PPR repeat 126 155 IPR002885 -
Pumo4g00527 486 Pfam PPR repeat family 405 451 IPR002885 -
Pumo4g00527 486 Pfam PPR repeat family 336 383 IPR002885 -
Pumo4g00527 486 Pfam PPR repeat family 162 205 IPR002885 -
Pumo4g00527 486 Pfam PPR repeat family 264 311 IPR002885 -
Pumo4g00527 486 Gene3D Tetratricopeptide repeat domain 259 328 IPR011990 GO:0005515
Pumo4g00527 486 Gene3D Tetratricopeptide repeat domain 395 471 IPR011990 GO:0005515
Pumo4g00527 486 Gene3D Tetratricopeptide repeat domain 329 394 IPR011990 GO:0005515
Pumo4g00527 486 MobiDBLite consensus disorder prediction 1 29 - -
Pumo4g00527 486 Gene3D Tetratricopeptide repeat domain 73 258 IPR011990 GO:0005515
Pumo4g00527 486 MobiDBLite consensus disorder prediction 54 68 - -
Pumo4g00527 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Pumo4g00527 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 405 439 IPR002885 -
Pumo4g00527 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Pumo4g00527 486 NCBIfam pentatricopeptide repeat 126 158 IPR002885 -
Pumo4g00527 486 NCBIfam pentatricopeptide repeat 409 440 IPR002885 -
Pumo4g00527 486 NCBIfam pentatricopeptide repeat 303 331 IPR002885 -
Pumo4g00527 486 NCBIfam pentatricopeptide repeat 231 266 IPR002885 -
Pumo4g00527 486 NCBIfam pentatricopeptide repeat 196 230 IPR002885 -
Pumo4g00527 486 NCBIfam pentatricopeptide repeat 161 188 IPR002885 -
Pumo4g00527 486 NCBIfam pentatricopeptide repeat 338 370 IPR002885 -
Pumo4g00527 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Pumo4g00527 486 MobiDBLite consensus disorder prediction 50 70 - -
Pumo4g00527 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Pumo4g00527 486 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 215 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00527 Pumo-Chr4 7001519 7004000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00527 106 480 Glycosyltransferase AT1G05670 24.740 2.64e-23 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00527 - - gmx:100813729 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00527 4 7001519 7004000 Pumo4g00527 4 7001519 7004000 ECH
Pumo4g00527 4 7001519 7004000 Pumo2g01865 2 35620610 35623329 PCT