Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01865 ATGACTTCAATGTCCCTCTCGTTTTCTTCTTCCATTCTTTCATCTCCCATTCCCCACGCCAAACCCAACACGAAACTCGCAACCCTCATCTCAGTTTCAGCGTCGAAAACCGCTGTCTCTGCAGCTTCTACCCGAAAACCAGCTCCAGCGACGAGAACCAGAAACCCGAAAGAAAAGGAATTTCCCCAAACATTGTTTTTTGAGAGTATGGAGAAGAAACCCATCAAGAAGAAGAAAAAGATGAAGGAGAAAACGAAGAGTGGTAAGGCCTGGGTCCACTCTCTCCCCGAAGTCTTATCCTATCGAATTCACAAGAGGCACTGGAGTATAGCCCTTGAGTTGTTTGACATGCTTAGAGAGCAACCCTATTACCAACCAAGGGAAGATACTTACATGAAACTAATTGTGTTGCTTGGAAAATCCGGCCAACCCCATCGTGCCCGTGAGCTTTTTAACTCTATACATGAAGATGGTTGTGAAAGTACTGAACTTTACACCGCCTTAATTGCAGCATTTTGTCAGAACAACCTGGTTGATGAGGCATTGTCGATTCTTGAGGAGATGATGAAGATGAACCTCCCTGGTTGCCAGCCTGATATTTTCACTTACAGTACCTTGATAAAAGCTCTTGTGGATGCTTTGAAATTTGAAATGGTTGAGTTGCTGTATGATAAAATGGCTGAAAGATCTATCATGCCAAACATTTACATCCAGAACCTTGTCCTGAGTGGTTATGGTAAGGCTGGGAGGTTTGATCAGATGGAGAAAATAGTGTCAAGTATGATGGAGAGCGCTACGTGCAAGCCTGATGTTTGGACAATGAACACAGTCATCAGTGTCTTTGGTGATAAGGGTCAAGTTGATATGATGGAGAAATGGTATGAGAAATTTTGTAGTTTTGGGATACAACCACAAAGGAGCACTTTTAATATTTTAATTGCAGCTTATGGTAGTAAAAGAATGTATGACAAAATGTCATCAGTTATGCAGTGTATGCGCAAGGTAAAATGTCCATGGACGACCTCAACTTATAACAACGTGATTGAGGCATTTGCGGCTGTAGGCGATGCTGAAAACATGGAACATGCATTTGATCAAATGTGTGCTGAGGGTTTGAAAGCAGATACTAAGACATTCTGCTGCCTTATCAATGGTTATGCTAATGCAGGTATCTTCCATAAAGTAATTAGCAGTGTTAGTTTGGCTGTGAAGCTTCAGATACCTGTGAATACTTCCTTTTACAATGCAGTCATATCTGCATGTGCAAAGGAAGATTCTTTGATGGAAATGGAAAGATTTTTCAAGTGTATGAAAGAAAAAGAATGTCAACCATGA 1335 0.4135 MTSMSLSFSSSILSSPIPHAKPNTKLATLISVSASKTAVSAASTRKPAPATRTRNPKEKEFPQTLFFESMEKKPIKKKKKMKEKTKSGKAWVHSLPEVLSYRIHKRHWSIALELFDMLREQPYYQPREDTYMKLIVLLGKSGQPHRARELFNSIHEDGCESTELYTALIAAFCQNNLVDEALSILEEMMKMNLPGCQPDIFTYSTLIKALVDALKFEMVELLYDKMAERSIMPNIYIQNLVLSGYGKAGRFDQMEKIVSSMMESATCKPDVWTMNTVISVFGDKGQVDMMEKWYEKFCSFGIQPQRSTFNILIAAYGSKRMYDKMSSVMQCMRKVKCPWTTSTYNNVIEAFAAVGDAENMEHAFDQMCAEGLKADTKTFCCLINGYANAGIFHKVISSVSLAVKLQIPVNTSFYNAVISACAKEDSLMEMERFFKCMKEKECQP 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01865 444 MobiDBLite consensus disorder prediction 35 50 - -
Pumo2g01865 444 NCBIfam pentatricopeptide repeat 164 193 IPR002885 -
Pumo2g01865 444 NCBIfam pentatricopeptide repeat 273 304 IPR002885 -
Pumo2g01865 444 NCBIfam pentatricopeptide repeat 343 375 IPR002885 -
Pumo2g01865 444 NCBIfam pentatricopeptide repeat 130 161 IPR002885 -
Pumo2g01865 444 NCBIfam pentatricopeptide repeat 201 234 IPR002885 -
Pumo2g01865 444 NCBIfam pentatricopeptide repeat 308 340 IPR002885 -
Pumo2g01865 444 NCBIfam pentatricopeptide repeat 237 271 IPR002885 -
Pumo2g01865 444 NCBIfam pentatricopeptide repeat 414 444 IPR002885 -
Pumo2g01865 444 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Pumo2g01865 444 Gene3D Tetratricopeptide repeat domain 392 444 IPR011990 GO:0005515
Pumo2g01865 444 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Pumo2g01865 444 PANTHER EXPRESSED PROTEIN 25 444 IPR044179 GO:0003729
Pumo2g01865 444 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 161 195 IPR002885 -
Pumo2g01865 444 Gene3D Tetratricopeptide repeat domain 264 364 IPR011990 GO:0005515
Pumo2g01865 444 Gene3D Tetratricopeptide repeat domain 80 263 IPR011990 GO:0005515
Pumo2g01865 444 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Pumo2g01865 444 MobiDBLite consensus disorder prediction 1 21 - -
Pumo2g01865 444 MobiDBLite consensus disorder prediction 35 61 - -
Pumo2g01865 444 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 269 IPR002885 -
Pumo2g01865 444 MobiDBLite consensus disorder prediction 1 18 - -
Pumo2g01865 444 Pfam PPR repeat 414 442 IPR002885 -
Pumo2g01865 444 Pfam PPR repeat 239 263 IPR002885 -
Pumo2g01865 444 Pfam PPR repeat 130 159 IPR002885 -
Pumo2g01865 444 Pfam PPR repeat family 341 388 IPR002885 -
Pumo2g01865 444 Pfam PPR repeat family 269 316 IPR002885 -
Pumo2g01865 444 Pfam PPR repeat family 164 211 IPR002885 -
Pumo2g01865 444 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01865 Pumo-Chr2 35620610 35623329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01865 165 444 Glycosyltransferase AT1G05670 23.675 2.11e-19 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01865 - - gmx:100776657 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01865 2 35620610 35623329 Pumo2g01865 2 35620610 35623329 ECH
Pumo4g00527 4 7001519 7004000 Pumo2g01865 2 35620610 35623329 PCT