Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00510 ATGTCGCAGCCTTCAATGAAACGGCTACATTTAGTTCAAGGTTTACTGAAAATGAAGAAGTGGTATGGAGGCCTGTTGATAATGGCTCTGGGTATGATGTTGTTTTTCCTCTACAACGTCAAAGGAATTCAGCCACAGAAGCAATCAGCAAAACAGTCGGCATACAATTTCTTCAATAACCATACACCAGGTGATTCTATTAACGGAAGCAGCAATCTTCAAGTAAACTCTTCTGAGGTGGAACAAAAAAGGGTACCAACACCAACAAAAAGGCCATATTTGGTACATGTTGCAGGGCTTGATGATCTGTATGACATGAAAGGAGAGATGAATGCTGTGCTTATTTGGGATTCCTTACGTTCCTTGCTGTCAAGGTCAGATGCTTTGGCTGAAACAGCTCAAGGAGTTAAAGAGGCTTCTGTAGCATGGAAAGAGTTGCTGTCCACTGTTGAAAATTACAAAGCTTCTAAGATTAATAAGATGGATGGCCCAGAAAATCAAAACTGCCCATTCTCTGTGACCTCACCTGGTAAGGCTGTACCAGATAGTGGAATCACTCTTGATCTCCCTTGTGGTCTGGTTGTAGATTCTTCTATTACACTGATTGGAATCCCTAAAAACAGAAGCTTCCAGATTGACCTTGCTGGGCAAGAGCTAGAAGGGGAGCCAAATCCTCCAATTATCTTGCATTATAATGTGAGTCTTCCTGGAGAAAACATGACAGAGGAACCATATATTGTTCAAAATACATGGACTAGTGATTTAGGGTGGGGAAAAGAGGAAAGGTGTCCTGCTCGTGGTTCTGCCAACATTCAAGAAGTTGATGGACTTGTTCTCTGCAATGTACAAGCTGTCAGAAGTAACAACAAAGGGAATGTAAATGTTGGTCAACCTGCTAGTGATATACCTTCTAATATTTCCTCAGAAAGTGCACATAGAACTGCTAATTTCCCCTTTGCTGAGGGTAATCCTTTCACTTCCACATTGTGGGTTGGTTCAGAGGGATTTCATATGACTGTGAATGGAAGGCATGAAACGTCTTTTGCATATAGGGAGAAACTTGAACCATGGTTAGTCAGCAGTATTAAAGTAGCAGGCAGTTTAAGTCTCTTATCAATCCTGGCTAAAGGTTTACCTGTTACTGAAGATAATGATATAGTTGTTGATGTTGAGAATCTGAAGGCTCCTTCTATCCCCAGAAAAAGGCTTGTTTTGTTGATTGGAGTATTCTCTACCGGAAACAACTTTGAGCGTCGCATGGCCCTGAGGAGGTCTTGGATACAATATGAGGCTGTACGTTCTGGAGAAGTTGCTGTCCGATTTTTCATTGGGCTTCACAAGAACAATAGGGTTAATTTTGAGTTATGGACTGAAGCTCAAGCATATGGAGATATTCAATTAATGCCTTTTGTAGATTATTATAGTTTGATTTCTTTGAAGACAGTTGCAATTTGCATTATGGGGACAAAAATCATCCCTTCTAAATACATCATGAAAACAGATGATGATGCCTTTGTTAGGATTGATGAAGTGCTTTCCAGCCTTAAAGGAAAGCCATCCAAAGGCCTCTTGTACGGTCTCATATCTTCTAAATCATCTCCTCAGAGGGATGAAGGCAGCAAGTGGTACATCAGCGAGGAGGAATGGCCACATGATACATACCCACCATGGGCACATGGTCCTGGCTATGTTATCTCACGAGACATAGCAAAATTCGTTGTCCATGGCCACCAAGAAAGAAAACTCCAGCTCTTTAAATTAGAAGATGTTGCCATGGGCATATGGATTGAACAGTTCAAGAATGGTGGTAAAGAAGTGCATTATGAAAATGATGAGAGGTTTTACAACGCTGGATGTGAATCAAATTATGTACTTGCCCATTATCAAAGCCCGAGGATGGTGCTATGCCTTTGGGAGAAATTGCAGAAAGAACACCAGCCAGTATGCTGTGAGTAG 1956 0.4136 MSQPSMKRLHLVQGLLKMKKWYGGLLIMALGMMLFFLYNVKGIQPQKQSAKQSAYNFFNNHTPGDSINGSSNLQVNSSEVEQKRVPTPTKRPYLVHVAGLDDLYDMKGEMNAVLIWDSLRSLLSRSDALAETAQGVKEASVAWKELLSTVENYKASKINKMDGPENQNCPFSVTSPGKAVPDSGITLDLPCGLVVDSSITLIGIPKNRSFQIDLAGQELEGEPNPPIILHYNVSLPGENMTEEPYIVQNTWTSDLGWGKEERCPARGSANIQEVDGLVLCNVQAVRSNNKGNVNVGQPASDIPSNISSESAHRTANFPFAEGNPFTSTLWVGSEGFHMTVNGRHETSFAYREKLEPWLVSSIKVAGSLSLLSILAKGLPVTEDNDIVVDVENLKAPSIPRKRLVLLIGVFSTGNNFERRMALRRSWIQYEAVRSGEVAVRFFIGLHKNNRVNFELWTEAQAYGDIQLMPFVDYYSLISLKTVAICIMGTKIIPSKYIMKTDDDAFVRIDEVLSSLKGKPSKGLLYGLISSKSSPQRDEGSKWYISEEEWPHDTYPPWAHGPGYVISRDIAKFVVHGHQERKLQLFKLEDVAMGIWIEQFKNGGKEVHYENDERFYNAGCESNYVLAHYQSPRMVLCLWEKLQKEHQPVCCE 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00510 651 ProSiteProfiles Galactoside-binding lectin (galectin) domain profile. 185 376 IPR001079 GO:0030246
Pumo4g00510 651 SMART galectin_3 183 376 IPR001079 GO:0030246
Pumo4g00510 651 CDD GLECT 186 373 IPR001079 GO:0030246
Pumo4g00510 651 Pfam Galactoside-binding lectin 186 374 IPR001079 GO:0030246
Pumo4g00510 651 Gene3D - 399 632 - -
Pumo4g00510 651 Pfam Galactosyltransferase 417 599 IPR002659 GO:0006486|GO:0016020|GO:0016758
Pumo4g00510 651 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 342 603 IPR002659 GO:0006486|GO:0016020|GO:0016758
Pumo4g00510 651 SMART Gal_bind_lectin_2 189 375 IPR001079 GO:0030246
Pumo4g00510 651 Gene3D - 179 374 - -
Pumo4g00510 651 FunFam Beta-1,3-galactosyltransferase GALT1 397 624 - -
Pumo4g00510 651 SUPERFAMILY Concanavalin A-like lectins/glucanases 186 377 IPR013320 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00510 Pumo-Chr4 6789094 6795388 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00510 16 651 Glycosyltransferase AT3G06440 51.788 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00510 K20843 - gmx:100816729 1233.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00510 4 6789094 6795388 Pumo4g00510 4 6789094 6795388 ECH
Pumo4g00510 4 6789094 6795388 Pumo8g01120 8 41337136 41342802 PCT