Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00506 ATGGCGTCTCTGACTCTGCAATTCTCCCCACTCTCTTCTCTCTTCTCCAAACCCTCCTCTGTTTGGACCCAACAATCCCAGAAGCGCGTTTCAATAACGATAGTGAACTCAATAGCAATAGCCAATGCACAGAACAAAGAGAGGGCGAGGCTTAAGAAACTCTTCGAAGAAGCCTACGAGAGATGCCGCACTGCTCCCATGGAAGGTGTTTCCTTCACTCTCGATGACTTCACTGCTGCTCTCGACAAGTACGACTTCGATTCCGAAGTTGGCACCAAGATTAAAGGCACTGTGTTCTACACAGATAACAATGGAGCAGTTGTTGATATAACTGCAAAGTCGTCGGCGTATTTGCCACTGCAAGAGGCGTGCATCCACAGGGTTAAGCATGTAGAAGAAGCGGGCCTAGTTCCTGGGGTCAAAGAGGAGTTTTTGATCATTGGTGAGAACCTAGCAGATGATAGCTTGGTCTTGAGTTTAAGGGCTCTTCAGTATGACCTTGCATGGGAACGTTGTAGACAGCTTCAAGCAGAAGATGTTACTGTCAAGGGTAAGATTGTGGGGGTCAACAAAGGTGGAGTCGTGGCTGAGGTAGAAGGCCTTAGAGGCTTTGTTCCATTGTCACAAATATCAACGAACTCAAACATAGAAGAGCTTCTTGATAAGAAGCTTCCTCTTAAGTTTGTGGAGGTGGATGAGGAACAATCTAGACTTGTCCTCAGCAACCGCAAGGCCGTAGCTGGCAACCAGGCACAGCTTGGAATTGGATCAGTGGTCACTGGCTCTGTTCAAAGCCTGAAGCCATATGGTGCCTTCATTGACATTGGTGGAATTAATGGCCTCCTTCACGTTAGTCAGATCAGTCATGACCGTGTAACTGATATTTCAACTGTACTTCAACCTGGTGACGTATTAAAGGTGATGATCTTAAGTCATGACCGAGAGAGAGGTCGAGTAAGTCTTTCCACTAAGAAGTTAGAGCCCACACCTGGAGACATGATCCGCAATCCAAAGCTCGTCTTTGAGAAGGCGGAGGAGATGGCTCAGACATTCAGACAGAGAATAGCCCAAGCAGAAGCTATGGCTCGTGCAGACATGCTTAGGTTCCAGCCTGAGAGTGGATTGACTATCAGCGGTGATGGGATCCTGGGACCATTCACTTCAGACTTGCCTGAAGAGGGACTGGATCTGAGTGAGGTACCACCAGCTGAAGAAGAATCATGA 1224 0.4771 MASLTLQFSPLSSLFSKPSSVWTQQSQKRVSITIVNSIAIANAQNKERARLKKLFEEAYERCRTAPMEGVSFTLDDFTAALDKYDFDSEVGTKIKGTVFYTDNNGAVVDITAKSSAYLPLQEACIHRVKHVEEAGLVPGVKEEFLIIGENLADDSLVLSLRALQYDLAWERCRQLQAEDVTVKGKIVGVNKGGVVAEVEGLRGFVPLSQISTNSNIEELLDKKLPLKFVEVDEEQSRLVLSNRKAVAGNQAQLGIGSVVTGSVQSLKPYGAFIDIGGINGLLHVSQISHDRVTDISTVLQPGDVLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTISGDGILGPFTSDLPEEGLDLSEVPPAEEES 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00506 407 SUPERFAMILY Nucleic acid-binding proteins 87 186 IPR012340 -
Pumo4g00506 407 MobiDBLite consensus disorder prediction 380 407 - -
Pumo4g00506 407 FunFam 30S ribosomal protein S1 75 172 - -
Pumo4g00506 407 Gene3D - 251 328 IPR012340 -
Pumo4g00506 407 FunFam 30S ribosomal protein S1, chloroplastic 173 249 - -
Pumo4g00506 407 FunFam 30S ribosomal protein S1 252 331 - -
Pumo4g00506 407 Coils Coil 41 61 - -
Pumo4g00506 407 PRINTS Ribosomal protein S1 signature 91 109 IPR035104 -
Pumo4g00506 407 PRINTS Ribosomal protein S1 signature 109 123 IPR035104 -
Pumo4g00506 407 PRINTS Ribosomal protein S1 signature 227 247 IPR035104 -
Pumo4g00506 407 PRINTS Ribosomal protein S1 signature 182 198 IPR035104 -
Pumo4g00506 407 Pfam S1 RNA binding domain 255 324 IPR003029 GO:0003676
Pumo4g00506 407 Pfam S1 RNA binding domain 178 241 IPR003029 GO:0003676
Pumo4g00506 407 SUPERFAMILY Nucleic acid-binding proteins 255 334 IPR012340 -
Pumo4g00506 407 ProSiteProfiles S1 domain profile. 256 324 IPR003029 GO:0003676
Pumo4g00506 407 ProSiteProfiles S1 domain profile. 179 243 IPR003029 GO:0003676
Pumo4g00506 407 Coils Coil 341 361 - -
Pumo4g00506 407 CDD S1_RPS1_repeat_hs4 256 324 - -
Pumo4g00506 407 Gene3D - 74 171 IPR012340 -
Pumo4g00506 407 CDD S1_RPS1_repeat_ec2_hs2 179 243 - -
Pumo4g00506 407 SMART S1_6 89 161 IPR022967 -
Pumo4g00506 407 SMART S1_6 254 324 IPR022967 -
Pumo4g00506 407 SMART S1_6 177 243 IPR022967 -
Pumo4g00506 407 PANTHER 30S RIBOSOMAL PROTEIN S1 47 394 - -
Pumo4g00506 407 SUPERFAMILY Nucleic acid-binding proteins 178 246 IPR012340 -
Pumo4g00506 407 Gene3D - 172 250 IPR012340 -
Pumo4g00506 407 ProSiteProfiles S1 domain profile. 91 161 IPR003029 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00506 Pumo-Chr4 6768282 6772393 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00506 K02945 - gmx:100812847 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00506 4 6768282 6772393 Pumo4g00506 4 6768282 6772393 ECH
Pumo4g00506 4 6768282 6772393 Pumo2g00059 2 1288493 1292929 PCT