Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00505 ATGTTCTTCAGCGGCGATCCTTCTACGCGGAAGCGTGTCGATTTGGGAGGTCGCAGTTCAAAGGAAAGGGACCGGAAGAACCTTCTAGAACAGACGCGAGTTGAACGCAACCGGCGCTTATGGTTGCGCCAGCAGAACTCTGCTGCACTCAAAATTCAGAAATGCTTCAGAGGGAGGAAAGCTGTCAGAACTGAACAATCTAAGTTGCGAGAGCAGTTCTATAAAATCTATGGGGGGAAGTATTGCCATAATGTGGACAGGAATTCTTTTGGTCCAGATTCTAATTTCCTCTGCCAGTTCCTCTATTTCTTTAAGGCAGAAAATTTTGATGATTTTTTAGTTCTTGTGCAAATATGCCGGTTGCTTTGGTGGTCTGTTCAGGATAATGGGGATGTTGTGAAACTATTTGCGGGGGCGGATTACTCATCCACACGTGCTTTAGTGAACTACCGAGTGAAGCGATTTGTACAGGCTTGTATTTGTGCTCTGCATCAGAATAGAAATCAGTTAAAAGATCAGCTTTTATTGACTCCCGAGGAATTGAATGTGTTAGCTATTCCTTTATTGGAGGTTTTAGTATTGTTAATTGATCCCAAATTGCCATGGAGCTGTAAGATAGTAGAATATCTCTTTCAAAACAATGCAGTTGGCCTACTCAGAGAGATCATTCTTACAGGAAAGGATAATGCAGAAAATTATTTTGCCATTGGCAAGGGATCATCATTGGAGCGTGTGCTTATTGCTGTAATATGTCATGTTGGTCGGAAGCCATGTATCTGTTCACATATTAATCCAAGATATAGCTTTGCATCACAGATCATCACAATTCCTTTCTTGTGGCATCTTTTTCCAAATTTACAACAGATTTTTGCAGCAGAGGACCTGAGCCAATGTTACATTCATCAAATGGCAAAGTTTGGGCAAAATCTGATCAATTTGCTACCTAAGGATATATCAAATGAATTTCCTAGCCATGCATGTATGCTTGGAAATGTATTAGAAACTGCTGGAATTGCTTTGTCTCATCCTGACTGTTCATTTGATATGGCCATAGACCTTGCAGCTGTCACTACAATTTTGCTGGAGGCACTCCCATCTGTGAAAACTTCCAATAGTAGAGAAAGTTCTATGATTGCTGAGGATGATATGACTGGAGACGATGAAACAAACATACTATTTAAAGAGATTTCATCTGTCAATGGCTCAGATTATGGACCCAATGATAGAGATGTTACAGCTGTTGATGGGATTTGTGGGTTTTTGAATGTTACCTTCAACAAGCTGCCACTAGAACGGATTATGACTGTGCTTGCTTACAGAACTGAACTTGTTCCAACACTTTGGAATTTTATGAAGCGGTGTCATGAGAACCAAAAATGGTCATCACACCTCTCAAATGATGCACCTGGTTGGCTGTTACCTCTGGCTGTATTCTGTCCTATCTACAAGCACATGCTTATGATTGTCGATAATGAAGAATTTTATGAGCAGGAGAAACCGCTATCACTGAAGGATATTAGAAGCCTCATCATTATATTGAGACAGGTTCTGTGGCAGCTACTGTGGGTGAATCATATCACATCTGCTAATTCGGTAAAATCTGTTACAGTTAGTTCAGCTAGTAAGGGGCAGTCTGTTCAGACCATTCAACAGAGGGTTAGCATTGTAGTCTCTGAGCTTCTCTCCCAGCTGCAAGATTGGAACAATAGGAGGCAGTTTACATCCCCAAGTAACTTCCATGCTGATGGGGGGAATGACTTATTTATCTCTCAGGCTGTAATAGAAAATACACGAGCAAATGAAATTTTGAAACAGGCCCCTTTCTTGATACCATTTACGAGCAGGGTTAAAATATTCTCTTCTCAACTAGCTGCTGTTAGGCAAAGGCATGGACCTCAGGCTGTATTTTCTAGAAATCGGTTCAGAATAAAACGAGATCGAATTTTGGAAGATGCTTATAATCAAATGAGTCAGTTGACAGAAGATAGTCTTCGAGGATCGATTCGTGTGACTTTTGTCAATGAATTTGGAGTTGAAGAGGCTGGAATTGATGGCGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAATATGGATTATTTAAGGAAACAGCGGATCACCTGCTTTATCCTAATCCTGGATCTGGAATGATACATGAACAGCATTTCCAATTTTTCCACTTCCTTGGTACTCTTCTTTCAAAGGCTATGTTTGAAGGGATTCTGGTTGATATACCATTTGCTACATTCTTCTTGAGCAAATTGAAACAAAAGCACAACTATTTGAATGACTTGCCTTCCTTGGACCCAGAATTATATCGTCATCTCATTTTTCTTAAGCATTATAGGGGTGACATTTCGGAGTTGGAACTATACTTTGTTATAGTAAATAATGAATATGGAGAACAAACAGAGGAGGAACTGCTTCCTGGAGGAAGGAACCTACGTGTCACTAATGAGAATGTCATTACTTTTATTCATCTTGTAGCCAATCACCGCTTGAATTTTCAGATACGCCAACAAAGTTCACATTTCTTGAGGGGATTTCAGCAACTTATTCAGAAGGATTGGATTGACATGTTTAATGAACATGAACTTCAGCTTCTGATATCAGGTTCACTTGACAGCTTGGATATTGATGATCTGCGGCTGCACACCAACTATGCAGGAGGCTATCATAGTGAGCATTATGTTATCGAGATGTTTTGGGAAGTTCTCAAAGGCTTTTCATTGGAAAACAGGAAGAAATTTTTGAAGTTTGTGACAGGTTGCTCTCGTGGGCCATTGCTTGGTTTTCGATATCTTGAACCTGTGTTTTGCATACAAAGGGCTTCCGGTAATGCCGATGGGGAATCACTTGACCGATTACCGACATCGGCTACTTGTATGAATCTACTAAAGCTGCCGCCTTATACAAGTAAGGAGCAATTGGAAACCAAATTACTGTATGCCATAAATGCCGATGCTGGCTTTGATTTAAGTTAA 3006 0.4042 MFFSGDPSTRKRVDLGGRSSKERDRKNLLEQTRVERNRRLWLRQQNSAALKIQKCFRGRKAVRTEQSKLREQFYKIYGGKYCHNVDRNSFGPDSNFLCQFLYFFKAENFDDFLVLVQICRLLWWSVQDNGDVVKLFAGADYSSTRALVNYRVKRFVQACICALHQNRNQLKDQLLLTPEELNVLAIPLLEVLVLLIDPKLPWSCKIVEYLFQNNAVGLLREIILTGKDNAENYFAIGKGSSLERVLIAVICHVGRKPCICSHINPRYSFASQIITIPFLWHLFPNLQQIFAAEDLSQCYIHQMAKFGQNLINLLPKDISNEFPSHACMLGNVLETAGIALSHPDCSFDMAIDLAAVTTILLEALPSVKTSNSRESSMIAEDDMTGDDETNILFKEISSVNGSDYGPNDRDVTAVDGICGFLNVTFNKLPLERIMTVLAYRTELVPTLWNFMKRCHENQKWSSHLSNDAPGWLLPLAVFCPIYKHMLMIVDNEEFYEQEKPLSLKDIRSLIIILRQVLWQLLWVNHITSANSVKSVTVSSASKGQSVQTIQQRVSIVVSELLSQLQDWNNRRQFTSPSNFHADGGNDLFISQAVIENTRANEILKQAPFLIPFTSRVKIFSSQLAAVRQRHGPQAVFSRNRFRIKRDRILEDAYNQMSQLTEDSLRGSIRVTFVNEFGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHFQFFHFLGTLLSKAMFEGILVDIPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHYRGDISELELYFVIVNNEYGEQTEEELLPGGRNLRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDIDDLRLHTNYAGGYHSEHYVIEMFWEVLKGFSLENRKKFLKFVTGCSRGPLLGFRYLEPVFCIQRASGNADGESLDRLPTSATCMNLLKLPPYTSKEQLETKLLYAINADAGFDLS 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00505 1001 Gene3D Hect, E3 ligase catalytic domain 765 844 - -
Pumo4g00505 1001 FunFam Putative Ubiquitin-protein ligase E3C 883 1000 - -
Pumo4g00505 1001 Gene3D Hect, E3 ligase catalytic domain 883 1000 - -
Pumo4g00505 1001 MobiDBLite consensus disorder prediction 11 28 - -
Pumo4g00505 1001 CDD HECTc 639 999 IPR000569 GO:0004842
Pumo4g00505 1001 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Pumo4g00505 1001 FunFam Putative Ubiquitin-protein ligase E3C 765 844 - -
Pumo4g00505 1001 Pfam HECT-domain (ubiquitin-transferase) 696 1001 IPR000569 GO:0004842
Pumo4g00505 1001 ProSiteProfiles HECT domain profile. 660 1001 IPR000569 GO:0004842
Pumo4g00505 1001 SMART hect_3 658 1001 IPR000569 GO:0004842
Pumo4g00505 1001 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 9 1001 IPR044611 GO:0000209|GO:0061630
Pumo4g00505 1001 MobiDBLite consensus disorder prediction 1 28 - -
Pumo4g00505 1001 SUPERFAMILY Hect, E3 ligase catalytic domain 629 993 IPR035983 GO:0004842
Pumo4g00505 1001 Gene3D Hect, E3 ligase catalytic domains 641 879 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00505 Pumo-Chr4 6730940 6754998 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00505 K10589 - gmx:100789933 1886.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00505 4 6730940 6754998 Pumo4g00505 4 6730940 6754998 ECH
Pumo4g00505 4 6730940 6754998 Pumo2g00062 2 1322665 1352210 PCT