Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00062 ATGTACTTCAGCGGCGATTCCTCTAATCGTAAGCGTGTTGATTTAGGTGGTCGCAGCTCGAAGGAACGGGACAGGAATAATCTTCTGGAACAGACGCGATTGGAGCGGAACCGGCGCTTGTGGTTGCGCCAGCAGAACTCTGCTGCACTCAGGATTCAGAAATGCTTCAGAGGGAGAAAAGTTGTCAGAACAGAACAATCTAAACTACGAGAGAAATTCCTTAGTATCTATGGGAAGAACTGCCAGAATTTAGACAGGAATGCTTTTGGTCCAGATTCTGATTTCCTCCGTCAGTTCCTCTATTTCTTTAATGCAGAAAATATTGATGATTTTTTAATTCTTGTGCAAATTTGCCGATTGCTTCAACAGTTTGTTCAAGAGAGTGGGGATGTTGTGAGACTTTTTGCTGGTGTGGATTACTCATCCACGTGTGCTTTGGTGAACTACCGATTGAAGCAATTTGTATATACTTGTATTCGTGCTGTACATCAGAATAGGAATCAGTTGAAGGTTCAGCTTTTATTGACTCCAAAGGAATTTAATGCATCAGCTATTCCTTTATTGGAAATCTTAGTATTGTTGATAGATCCCAAACTGCCATGGAGCTGTAAGATAGTAGGATCTCTGTCTCAAAACAATGCATTTGGCCTACTTAGAGAGATTATTCTTACAGGAAAGGATAATGCTGAAAATTGTATTTACAGTGAAAAAGGATCATCATTGGAGCGTGTGCTTACTGTTGTAATATGTCACATTGGTCAGAAGCCATGTATCTGTTCACATACTGATCCAGTATATAGCTTCTCATCACAGATCCTTACAATTCCTTTCTTGTGGCATGTTTTTCCAAACTTAAAACAGGTATTTGCAAAACAGGGCCTGAGCCAACATTACGTTCACCAGATGGCTACATGGGTGCCAAATCTGATTAGTTCTCTACCTAAGGATATATCAGATGAATTTCCTACCTATGCCTGTCTTCTTGGAAATATATTAGAAACTGGTGGAATTGCTTTGTCTCGACCTGACTGTTCCTTTGATATGGCCATAGACCTTGCTGCTGTTATCACATTTTTGCTGGAATCACACCCATCTCTGACAAGATCTGATGGAGAGAATTCTACTATTGCTGAGGATGAAATGACTGGCGAAGATGAAGTTATGGAAGTAGCTTTGGATAGGAAATTGAATCAACAAATTTGTAATGCCATAGATACTCGCTTCCTTTTGCAACTGACAAATATATTATTTAGAGATATTACATCTGCCAATGGTTCAGATCATGAGCCAGATGACAGGGAGGTTGCAGCTGTTGGTGCAGTTTGTGGGTTTTTATATGTTATCTTCAACACATTGCCACTTGAAAAGATTATGACTGTGCTTGCCTACAGAACTGAACTTGTTCCTATACTTTGGAATTTTATGAAACGGTGCCATGAGAATAAAAGATGGTCATCTTTGTCTGAGAGGTTATCATACCTCTCAGGTGATGCGCCTGGTTGGCTGTTGCCTCTTGCTGTATTCTGTCCTGTCTACAAGCATATGCTCATGATAGTTGATAATGAGGAATATTATGAGCAGGAGAAACCGCTATCACTGAAGGATATTAGAAGCCTTATCATTCTGTTAAGGCAGGCTCTGTGGCAGCTATTGTGGGTGAATCATACCATGTCTGCTAATTCAGTAAAGTCTGTTCCAATTGGCACAGCTATTAAAAAGCAGTCTGAAGCCATTCAACAGAGGGTTAGCATTGTAGTGTCTGAGCTTCTGTCTCAGCTGCAAGATTGGAACAACAGACGACAGTTTACATCTCCCAGTGACTTCCATGCTGATGGGGTGAATGACTTCTTTATCTCACAGGCTGTTATGGAAAATACACGAGCAAATGAAATTTTGAAGCAGGCTGCTTTCTTGATACCATTTACTAGCAGGGTTAAAATTTTCACTTCTCAACTAGCTGCTGCTAGGCAAAGACATGGATCTCAGGCTGTTTTTATTAGAAACCGGTTCAGAATACGGCGGAATCATATTTTGGAAGATGCTTATAATCAAATGAGTCAGTTGTCCGAAGATGACCTTCGAGGATTGATTCGTGTGGCTTTTGTCAATGAATTGGGAGTTGAAGAGGCTGGAATTGATGGAGGTGGAATATTCAAAGATTTCATGGAGAACATCACACGTGCTGCCTTTGATGTGCAGTATGGATTATTTAAGGAAACGGCAGATCACCTGCTTTATCCTAATCCTGGATCAGGAATGATACATGAACAACATCTCCAATTTTTCCACTTTCTTGGTACTCTTCTTGCAAAGGCTATGTTTGAAGGGATTCTGGTTGATTTACCATTTGCTACATTCTTTTTGAGCAAATTGAAACAAAAGCACAACTATTTGAATGACTTGCCTTCCCTGGACCCAGAATTATATCGTCATCTTATCTTTCTAAAGCATTATGAGCGTGACATTTCGGAGTTGGAACTATATTTTGTTATAGTAAACAACGAATATGGAGAGCAAACAGAAGAGGAGCTGCTTCCAGGGGGAAAGAACCTTCGTGTCACTAATGAGAATGTTATTACTTTTATCCATCTTGTAGCCAATCACCGCTTGAATTTTCAGATACGTCAACAAAGTTCTCATTTCCTGAGAGGATTTCAGCAACTTATTCAGAAGGATTGGATTGATATGTTTAATGAGCATGAACTTCAGCTTCTGATATCAGGTTCACTTGACAGCTTGGATGTTGATGATTTGCGGCAGCATACACACTATGCAGGAGGCTATCATAGTGAGCATTATGTTATTGAGATGTTCTGGGCAGTTCTCAAAGGCTTTTCATTAGAAAACAAGAAGAAAATCTTGAAGTTTGTGACAGGTTGCTCTCGGGGACCATTGCTTGGATTCCAATATCTTGAACCTTTGTTTTGCATACAAAGGGCCGGTGGTCATGATTCGGAGGAAGCTCTTGACCGATTACCGACATCAGCTACTTGTATGAACTTACTAAAGCTTCCACCTTATAAAAGTAAAGAGCACCTGGAAACCAAACTACTGTATGCCATAAACGCTGATGCTGGCTTTGATTTGAGTTAA 3093 0.4022 MYFSGDSSNRKRVDLGGRSSKERDRNNLLEQTRLERNRRLWLRQQNSAALRIQKCFRGRKVVRTEQSKLREKFLSIYGKNCQNLDRNAFGPDSDFLRQFLYFFNAENIDDFLILVQICRLLQQFVQESGDVVRLFAGVDYSSTCALVNYRLKQFVYTCIRAVHQNRNQLKVQLLLTPKEFNASAIPLLEILVLLIDPKLPWSCKIVGSLSQNNAFGLLREIILTGKDNAENCIYSEKGSSLERVLTVVICHIGQKPCICSHTDPVYSFSSQILTIPFLWHVFPNLKQVFAKQGLSQHYVHQMATWVPNLISSLPKDISDEFPTYACLLGNILETGGIALSRPDCSFDMAIDLAAVITFLLESHPSLTRSDGENSTIAEDEMTGEDEVMEVALDRKLNQQICNAIDTRFLLQLTNILFRDITSANGSDHEPDDREVAAVGAVCGFLYVIFNTLPLEKIMTVLAYRTELVPILWNFMKRCHENKRWSSLSERLSYLSGDAPGWLLPLAVFCPVYKHMLMIVDNEEYYEQEKPLSLKDIRSLIILLRQALWQLLWVNHTMSANSVKSVPIGTAIKKQSEAIQQRVSIVVSELLSQLQDWNNRRQFTSPSDFHADGVNDFFISQAVMENTRANEILKQAAFLIPFTSRVKIFTSQLAAARQRHGSQAVFIRNRFRIRRNHILEDAYNQMSQLSEDDLRGLIRVAFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETADHLLYPNPGSGMIHEQHLQFFHFLGTLLAKAMFEGILVDLPFATFFLSKLKQKHNYLNDLPSLDPELYRHLIFLKHYERDISELELYFVIVNNEYGEQTEEELLPGGKNLRVTNENVITFIHLVANHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDVDDLRQHTHYAGGYHSEHYVIEMFWAVLKGFSLENKKKILKFVTGCSRGPLLGFQYLEPLFCIQRAGGHDSEEALDRLPTSATCMNLLKLPPYKSKEHLETKLLYAINADAGFDLS 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00062 1030 ProSiteProfiles IQ motif profile. 45 72 IPR000048 GO:0005515
Pumo2g00062 1030 Gene3D Hect, E3 ligase catalytic domain 912 1029 - -
Pumo2g00062 1030 MobiDBLite consensus disorder prediction 1 20 - -
Pumo2g00062 1030 ProSiteProfiles HECT domain profile. 689 1030 IPR000569 GO:0004842
Pumo2g00062 1030 SUPERFAMILY Hect, E3 ligase catalytic domain 661 1022 IPR035983 GO:0004842
Pumo2g00062 1030 FunFam Putative Ubiquitin-protein ligase E3C 912 1029 - -
Pumo2g00062 1030 Pfam HECT-domain (ubiquitin-transferase) 725 1030 IPR000569 GO:0004842
Pumo2g00062 1030 Gene3D Hect, E3 ligase catalytic domain 794 873 - -
Pumo2g00062 1030 Gene3D Hect, E3 ligase catalytic domains 670 908 - -
Pumo2g00062 1030 SMART hect_3 687 1030 IPR000569 GO:0004842
Pumo2g00062 1030 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 10 1030 IPR044611 GO:0000209|GO:0061630
Pumo2g00062 1030 FunFam Putative Ubiquitin-protein ligase E3C 794 873 - -
Pumo2g00062 1030 CDD HECTc 676 1028 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00062 Pumo-Chr2 1322665 1352210 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00062 K10589 - gmx:100787467 1951.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00062 2 1322665 1352210 Pumo2g00062 2 1322665 1352210 ECH
Pumo4g00505 4 6730940 6754998 Pumo2g00062 2 1322665 1352210 PCT