Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00401 ATGCTAGTACTGGCATTGCTCTTGCTGCTGGCGTTGAGCAATGAAGTCAGAGTTAATGGTGATGGCGGTGGTAGACAATGTGAGATTAATCCAGCACTAAAGCCAAGACCACACACTGTGTCCATCTTGGAGTTTGGTGCGGTTGGGGATGGTAAAACAGTGAACACTATTGCATTCCAGAATGCCATTTTCTATCTCAAGTCATTTGCTGACAAGGGTGGTGCTCAGTTATATGTGCCACCGGGAACATGGTTGACTCAAAGTTTCAATCTTACTAGCCATCTTACACTTTTCTTGGAAAAAGGTGCTGTAATTCTTGGATCTCAGGATCCATTTCACTGGGAGGTTGTTGATCCATTACCATCTTATGGCCGAGGAGTTGAAGTTCCTGGGGGAAGATATCAGAGTTTGATAAATGGATACATGTTACATGATGTGGTGATAACAGGTAATAATGGAATCATTGATGGCATGGGATTAGCTTGGTGGGAATTGTTTAGCTCTCATTCCCTGAACTACAGCCGTCCACATCTGATTGAATTAGTGGCTTCTGATCACGTGGTAGTTTCAAATCTTACATTCTTGAACGCTCCTGCATATAGCATTCACCCAGTTTATTGCAGCAATGTACATATTCACAATGTTTCAATTTCTGCTCCTCCAGAATCTCCTTATACTGTTGGCATAGTACCAGATTCTTCTGATCATGTTTGTATAGAGGATTGTGTCATTGCAACCAGCTATGATGCAATTTCCCTCAAAAGTGGCTGGGACGAATATGGCATTGCCTATGGCAGGCCAACTGAGAATGTACACATCAGAAGGGTGCATCTGCAGGCTTCTTCTGGCTCTACTATTGCATTTGGCAGTGACATGTCTGGTGGCATTTCAAATATTCTTGTGGAGAATGTTCATCTTTACAACTCAAAGAGTGGCATTGAGTTCAGAACCATGAGGGGTAGAGGTGGTTACATGAAGGAAATCATTATAGCAGACATAGAAATGGAGAATATATACACTGCAATAGCTGCCACAGGTTATTGTGGGTCTCATCCTGATGACAAATTTGATCCTAATGCTCTCCCACTTTTGGACCACATTATTTTCCAAGATATGATTGGCACAAACATCACTATTGCTGGAAGCTTTGCTGGACTACAAGAATCTCCCTTCACTCACATATGCCTTTCCAACATAACTTTGTCTATAAATTCTGTTTCTTCCATTCCTTGGGAATGCTCAAATGTCTCCGGATTTTCAGATTCTGTTCTTCCCAAACCCTGTCCTGATCTTGAGACCCTTTCGGATTGTCTCTCCTTGCTGAGTATCAACGGAAAAACAGCAATCATGTGA 1353 0.422 MLVLALLLLLALSNEVRVNGDGGGRQCEINPALKPRPHTVSILEFGAVGDGKTVNTIAFQNAIFYLKSFADKGGAQLYVPPGTWLTQSFNLTSHLTLFLEKGAVILGSQDPFHWEVVDPLPSYGRGVEVPGGRYQSLINGYMLHDVVITGNNGIIDGMGLAWWELFSSHSLNYSRPHLIELVASDHVVVSNLTFLNAPAYSIHPVYCSNVHIHNVSISAPPESPYTVGIVPDSSDHVCIEDCVIATSYDAISLKSGWDEYGIAYGRPTENVHIRRVHLQASSGSTIAFGSDMSGGISNILVENVHLYNSKSGIEFRTMRGRGGYMKEIIIADIEMENIYTAIAATGYCGSHPDDKFDPNALPLLDHIIFQDMIGTNITIAGSFAGLQESPFTHICLSNITLSINSVSSIPWECSNVSGFSDSVLPKPCPDLETLSDCLSLLSINGKTAIM 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00401 450 SUPERFAMILY Pectin lyase-like 32 430 IPR011050 -
Pumo4g00401 450 Pfam Pectate lyase superfamily protein 40 97 IPR024535 -
Pumo4g00401 450 SMART pbh1 234 255 IPR006626 -
Pumo4g00401 450 SMART pbh1 207 233 IPR006626 -
Pumo4g00401 450 SMART pbh1 184 206 IPR006626 -
Pumo4g00401 450 SMART pbh1 296 317 IPR006626 -
Pumo4g00401 450 SMART pbh1 268 290 IPR006626 -
Pumo4g00401 450 Pfam Glycosyl hydrolases family 28 137 417 IPR000743 GO:0004650|GO:0005975
Pumo4g00401 450 PANTHER PECTIN LYASE-RELATED 7 432 - -
Pumo4g00401 450 Gene3D - 27 421 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00401 Pumo-Chr4 5358003 5361030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00401 1 437 Glycoside Hydrolase AT3G06770 62.812 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00401 - - gmx:100802343 874.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00401 4 5358003 5361030 Pumo4g00401 4 5358003 5361030 ECH
Pumo4g00401 4 5358003 5361030 Pumo2g01341 2 19537547 19540222 PCT