Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01341 ATGCTTGTAAGATATCTTCTGAGAATCAATGGGTTGCATTTTGCTTTTTCTACCCTCTTTCAGGTGGCATTGCTCTTGCTGGTGGCATTGAGCAATGCCGTGAGAGTTAGTGGAGATGGTGGGCAATGTGGTTCCAACCCAACACTAGACCCAAGACCACACAGTGTCTCCATTTTGGAGTTTGGTGCGGTTGGAGATGGTAAAACACTCAACACTATTGCTTTCCAGAATGCCATCTTCTATCTCAAGTCATTTGCTGATAAGGGTGGCGCTCAGCTCTATGTGCCTCCTGGAAAATGGCTCACTGGAAGCTTCAATCTCACCAGCCATCTCACCCTCTTTTTGGAAAAAGGTGCTGTCATTATTGGAACTCAGGATCCATCTCATTGGGATGTTGTTGAACCCTTGCCTTCTTATGGCCGAGGGCTTGAAGTTCCTGGGGGAAGATATCAGAGCTTGATAAATGGATACATGTTACATGATGTGGTCGTAACAGGTAATAATGGAACCATTGATGGCATGGGAATGGTTTGGTGGGAGTGGTATAGCACTCATTCCTTGAACCACAGTCGTCCTCATTTGGTTGAAATTGTGGCATCTGATTATGTGGTAGTTTCAAACCTTACATTCTTGAATGCTCCAGCTTATAGCATACACCCAGTTTATTGCAGCCATGTACATATTCAAAATGTTTCAATCTCTAATCCTCCAGAATCCCCTTATACTGTTGGTATAGTGCCAGATTCTTCTGATAATGTGTGTATAGAAGATTGTATTGTTGCCATGGGATTTGATGCAATTTCTCTTAAAAGTGGCTGGGATGAGTATGGCATTGCTTATGGCAGGCCTACTGAGAATGTACACATCAGAAGGGTGCACCTTCATGCATTTTCTGGCTCTGCTCTTGCATTTGGCAGTGACATGTCTGGTGGCATTTCAAATGTTCTAGTGGAGCATGCTCATCTTTTCAACTCAAACAGTGGCGTTGAGTTCAGAACCACCAAAGGAAGAGGTGGTTATATGAAAGAAATTGTTATGTCAGACATACAAATGGAGAATGTCCACACAGCAATTGCTGCCACAGGTAATTGTGGCTCTCATCCTGATGACAAGTTTGATCCAAATGCACTCCCACATTTGGATCACATTACCTTGAAGGATGTCACAGGTACAAACATTACCATTGCTGGAAACTTGGCTGGAATAGAAGAATCCCCTTTCACAAACATATGCCTTTCCAACATAACCTTGTCTACAAATTCTGTTTCTCCTATTACTTGGGAATGCTCAAATGTGTCTGGTTTTTCAGACTCAGTGCTCCCAGAGCCTTGTCCAGAACTTGGCAACCCCTCATATGATTCTTCCTCATCCTGTTTTTACCTGCTGAGTATCAGTGGCAAAACTGCAGTGCAGTGA 1416 0.4336 MLVRYLLRINGLHFAFSTLFQVALLLLVALSNAVRVSGDGGQCGSNPTLDPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGKWLTGSFNLTSHLTLFLEKGAVIIGTQDPSHWDVVEPLPSYGRGLEVPGGRYQSLINGYMLHDVVVTGNNGTIDGMGMVWWEWYSTHSLNHSRPHLVEIVASDYVVVSNLTFLNAPAYSIHPVYCSHVHIQNVSISNPPESPYTVGIVPDSSDNVCIEDCIVAMGFDAISLKSGWDEYGIAYGRPTENVHIRRVHLHAFSGSALAFGSDMSGGISNVLVEHAHLFNSNSGVEFRTTKGRGGYMKEIVMSDIQMENVHTAIAATGNCGSHPDDKFDPNALPHLDHITLKDVTGTNITIAGNLAGIEESPFTNICLSNITLSTNSVSPITWECSNVSGFSDSVLPEPCPELGNPSYDSSSSCFYLLSISGKTAVQ 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01341 471 PANTHER PECTIN LYASE-RELATED 25 455 - -
Pumo2g01341 471 Pfam Glycosyl hydrolases family 28 154 433 IPR000743 GO:0004650|GO:0005975
Pumo2g01341 471 SUPERFAMILY Pectin lyase-like 51 447 IPR011050 -
Pumo2g01341 471 Gene3D - 45 437 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01341 Pumo-Chr2 19537547 19540222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01341 22 459 Glycoside Hydrolase AT3G16850 63.864 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01341 - - gmx:100777503 936.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01341 2 19537547 19540222 Pumo2g01341 2 19537547 19540222 ECH
Pumo4g00401 4 5358003 5361030 Pumo2g01341 2 19537547 19540222 PCT