Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00391 ATGGCGGCCATTGCAAAGAGTGCTGCCATTCTTATAATTTTGTTCTTTGCATTGGCCTGCAATGCGGATGATGCTAAAAAAAAACCAGAACCAGTTGCTGGTCCTGACATGTTCAGGCATAAAAATGTGGCTAAGGATGTGCTCCTTCCTGGGGAGCAAATAGTTAACGTCAAGGATTTTGGAGCCGTAGGTGATGGCAAGTTCGACTGCACCCAGGCTTTCATGAGTGCATGGGCAAAGACCTGCCATGAATCGTTTGGGCCAGCCAGGCTTTACGTTCCTCTTGGCAGATACGTGGTTTCACAAATGTTTTTTAATGGGCCATGCAATGCTTCGAGTCCAGTAACAATTCAAGTGCAAGGGACTATTTTGGCTACCACGGATATTTCGGAGTATGCAAACGAGGAGTGGCTCATATTCCAGCACCACAATGGCTTGAAAATTATTGGCGGGGGCACTTTCGATGGCCAGGGCAAAGATTCATGGCAATACTCCGAGAATTGCGAATCAGCCGCTGACACTTCATGCAAAAGGAATCCAAGCAGCCTTTATTTCAGCGATAGCCACAACGTGGTTATACAGAATATCAGAACAGCGAATCCCAAAGGCTTTCACATATTCGTTACCAAATGTACAAACGTCAGATTGAGAAGACTTAAGCTGCTTGCACCGGAAACCAGCCCCAATACTGATGGCATTCATGTCAGCCACTCTGACACTGTCATAATATCAAGAAATACCATTGCAACTGGGGATGACTGTATCTCTATGATCCAAGGAGTCAGAAACATTTTCATCAACAGACTCAAGTGTGGCCCTGGACACGGTATTAGTATCGGTAGCCTTGGGAAGTATGAGGATGAGGAAGAGGTGAGAGGCGTTCGTATCAAGAACTGCTCATTGACTGGCACAACCAACGGCCTTAGAATCAAGTCATGGCCAGATAAGTATCCAGGTGCAGCGTCAGATATAAGCTTCAGTGAAATTATCATGAATGATGTCAAAAATCCTATCATCATTGACCAAGAGTATGAATGCTATCCAGACTGCAAAAAGAAGCCGTCACTTGTAAAGCTCCAAAATATTCATTTTGCAAATGTGAAGGGAACTACAACTTCACAACTTGCAGTGGACTTAAGGTGCAGCAAGCTATACCCGTGCGAAGGTATTACATTTCGAGACATTGACCTGAAGCTTGGACTCGCCCCAACCACCGCAAGATGTGTCAATACTGATCAACCTCTCTTTGGAGGCTTGTTAATGCCCCCAGCATGCGTATAG 1281 0.4528 MAAIAKSAAILIILFFALACNADDAKKKPEPVAGPDMFRHKNVAKDVLLPGEQIVNVKDFGAVGDGKFDCTQAFMSAWAKTCHESFGPARLYVPLGRYVVSQMFFNGPCNASSPVTIQVQGTILATTDISEYANEEWLIFQHHNGLKIIGGGTFDGQGKDSWQYSENCESAADTSCKRNPSSLYFSDSHNVVIQNIRTANPKGFHIFVTKCTNVRLRRLKLLAPETSPNTDGIHVSHSDTVIISRNTIATGDDCISMIQGVRNIFINRLKCGPGHGISIGSLGKYEDEEEVRGVRIKNCSLTGTTNGLRIKSWPDKYPGAASDISFSEIIMNDVKNPIIIDQEYECYPDCKKKPSLVKLQNIHFANVKGTTTSQLAVDLRCSKLYPCEGITFRDIDLKLGLAPTTARCVNTDQPLFGGLLMPPACV 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00391 426 Pfam Glycosyl hydrolases family 28 87 412 IPR000743 GO:0004650|GO:0005975
Pumo4g00391 426 SUPERFAMILY Pectin lyase-like 51 417 IPR011050 -
Pumo4g00391 426 Gene3D - 49 415 IPR012334 -
Pumo4g00391 426 PANTHER - 53 411 - -
Pumo4g00391 426 SMART pbh1 291 312 IPR006626 -
Pumo4g00391 426 SMART pbh1 188 208 IPR006626 -
Pumo4g00391 426 SMART pbh1 238 259 IPR006626 -
Pumo4g00391 426 SMART pbh1 211 237 IPR006626 -
Pumo4g00391 426 ProSitePatterns Polygalacturonase active site. 268 281 IPR000743 GO:0004650|GO:0005975
Pumo4g00391 426 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Pumo4g00391 426 FunFam Pectin lyase-like superfamily protein 44 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00391 Pumo-Chr4 5278665 5280308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00391 54 423 Glycoside Hydrolase AT4G18180 42.377 7.28e-104 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00391 K01213 - gmx:100800324 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00391 4 5278665 5280308 Pumo4g00391 4 5278665 5280308 ECH
Pumo4g00391 4 5278665 5280308 Pumo2g01355 2 19865618 19869082 PCT