Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01355 ATGGCCACTACGAAGAGAATTGGTGTTTTAATTATGTGCTTTGCACTGGCTTATTATGTGGATGCTAAACCAAGAACAATGCCACGTCCTAGTCCTGATATCTACAAGGGTAAAAATGTAGCCAAGGATAAACTTACTCCTGGCGAGAAGATAGTTAATGTCATGAGCTTTGGAGCCAAACCTGATGGCAAGTATGACTGCACTCAGGCTTTCATGGATGCATGGAGAGCAACATGCAAGTCCAAAGAGCAAGCCAGGCTTCTGATCCCTAAGGGAAGATTCGTGGTTTCTACAATGTTTTTCGCAGGGCCATGTTTGTCTCCAAGGCCCATAACAATCCAAGTTGTAGGCACTGTTGCGGCTACAACAGATATCAGTGAGTATGTGAATGGTGAATGGCTCATGTTTGAGGACCTGGATGGTTTAAAACTTATTGGTGGTGGTACTTTTGATGGCATGGGTAAGGGATCATGGGCAGAAACTGAGAACTGTGAAGCAGACGAGTCCAACACTTGCGTCAGAAACCCTAGTAGTCTTTATTTCCACAAAGTCAGGAATGGACTTATACAGAACATCAAATCGGTAGACCCCAAAGGCTTTCATATATTTGTCACTAACTGTGTTAATATCAGACTTCGATTACTTAAGATCACTGCACCAGCTACCAGCCCCAACACCGATGGAATTCATATGAGCCACTCCATCGATGTAAAATTATCCAAAAATACCATTGAAACTGGAGATGATTGTGTTTCCATGATACAAGGAGTCAACGGTATTACCATCAACAAAATGAAATGTGGTCCTGGACACGGTATCAGTATTGGAAGTCTTGGAAAGTATGAGAATGAGCTAGAAGTGAAAGACGTTCGTGTCAAGAACTGCACGATGGTTGGCACAACCAATGGCCTCAGAATCAAGACATGGCCAGATAAGTATCCAGGTTCAGCATCAGATATCACCTTCAGTGACATTGTCATGGAAAATGTTAAAAATCCTATCATCATTGACCAAGAGTATGAATGCGATCCAACCTGCCAAAAGAAGCCTTCACTTGTAAAGATAAAAGATGTTGTTTTTTCAAATATAAGGGGAACCACAATTTCACCAATTGCAGTGGATTTAAGGTGTAGCAAGCAGTTCCCATGCCAAGATGTTACACTTAAGAACATAGACCTGAAGCATGGACCCAAGCCTGCCGAGTCTAGATGTGCCAACATTAAACCAGTCTATGGGGGCGTGCAAAGACCAGCAGCTTGCCTATAA 1266 0.4265 MATTKRIGVLIMCFALAYYVDAKPRTMPRPSPDIYKGKNVAKDKLTPGEKIVNVMSFGAKPDGKYDCTQAFMDAWRATCKSKEQARLLIPKGRFVVSTMFFAGPCLSPRPITIQVVGTVAATTDISEYVNGEWLMFEDLDGLKLIGGGTFDGMGKGSWAETENCEADESNTCVRNPSSLYFHKVRNGLIQNIKSVDPKGFHIFVTNCVNIRLRLLKITAPATSPNTDGIHMSHSIDVKLSKNTIETGDDCVSMIQGVNGITINKMKCGPGHGISIGSLGKYENELEVKDVRVKNCTMVGTTNGLRIKTWPDKYPGSASDITFSDIVMENVKNPIIIDQEYECDPTCQKKPSLVKIKDVVFSNIRGTTISPIAVDLRCSKQFPCQDVTLKNIDLKHGPKPAESRCANIKPVYGGVQRPAACL 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01355 421 Pfam Glycosyl hydrolases family 28 79 408 IPR000743 GO:0004650|GO:0005975
Pumo2g01355 421 Gene3D - 39 418 IPR012334 -
Pumo2g01355 421 SMART pbh1 317 338 IPR006626 -
Pumo2g01355 421 SMART pbh1 207 233 IPR006626 -
Pumo2g01355 421 SMART pbh1 287 308 IPR006626 -
Pumo2g01355 421 SMART pbh1 234 277 IPR006626 -
Pumo2g01355 421 SUPERFAMILY Pectin lyase-like 49 421 IPR011050 -
Pumo2g01355 421 PANTHER - 50 407 - -
Pumo2g01355 421 ProSitePatterns Polygalacturonase active site. 264 277 IPR000743 GO:0004650|GO:0005975
Pumo2g01355 421 FunFam Pectin lyase-like superfamily protein 40 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01355 Pumo-Chr2 19865618 19869082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01355 51 420 Glycoside Hydrolase AT4G18180 44.072 5.89e-105 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01355 K01213 - gmx:106796220 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01355 2 19865618 19869082 Pumo2g01355 2 19865618 19869082 ECH
Pumo4g00391 4 5278665 5280308 Pumo2g01355 2 19865618 19869082 PCT