Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00342 ATGTCAATGAGTGAGCGGAAGACTATTGACCTAGAACAGGGATGGGATTTCATGCAGAAGGGCATCACCAAGCTCAAGAACATTCTCGAAGGCTTGCCCGAGCCTCAATTCAGCTCCGAGGACTACATGATGCTTTATACGACCATCTACAATATGTGCACTCAAAAGCCTCCTCATGACTATTCCCAACAACTCTATGACAAGTATAAGGAGTCTTTTGAAGAGTACATCGTATCAACGGTATTGCCTTCTTTGAGAGAGAAGCATGATGAATTTATGTTGAGAGAACTTGTGAAGAGATGGGCGAACCATAAAATTATGGTTCGGTGGCTTTCTCGGTTCTTTCACTATTTGGATCGGTACTTTATTGCTCGGAGGTCACTTCCGCCCCTTAATGAAGTTGGGTTGACTTGCTTCCGTGATTTGGTTTACAAGGAACTAAATGGGAAAGTTAGAGATGCAGTTATTTCACTTATTGATCAAGAACGGGAGGGAGAGCAGATTGATCGAGCTCTATTAAAGAATGTATTAGACATATTTGTTGAAATTGGAATGGGGCAAATGGATCACTATGAGAATGATTTTGAAGCTGCCATGCTCAAAGACACTTCTGCTTATTATTCTCGAAAGGCTTCAAATTGGATCCTAGAAGATTCTTGTCCTGATTATATGCTCAAGGTTTTTGTTCGGAAGGTGATTGAGCTGCATGACAAGTACCTGGCATATGTGAACGATTGTTTCCAGAATCATACTCTTTTCCACAAGGCTCTTAAAGAAGCTTTTGAGGTCTTTTGCAACAAAGGTGTTGCTGGAAGTTCAAGTGCAGAACTGCTTGCCTCCTTCTGTGATAACATTCTTAAGAAAGGAGGAAGTGAAAAATTAAGTGATGAAGCAATCGAAGAAACTCTTGAAAAGGGTTCTTGCTTGGTTGTTTTCAGGAAGAAGCTTGCTCGAAGGCTTCTCTTTGACAAGAGTGCCAATGATGATCACGAGCGAAGTATTTTGACAAAATTGAAGCAACAATGTGGTGGACAGTTTACCTCAAAGATGGAAGGAATGGTTACAGATTTGACACTGGCAAAGGAGAATCAAACTAGCTTTGAGGAGTATTTAAGCAATAATCCCAATGCAGACCCTGGCATAGACTTGACAGTTACAGTTCTGACTACTGGCTTCTGGCCTAGTTACAAATCTTTTGATCTCAATCTTCCTGCAGAAATGATTAGGTGTGTGGAAGTTTTCAAAGAATTTTATCAAACTAAAACAAAGCACAGAAAACTTACATGGATTTATTCCTTGGGTACCTGTAATATAAGTGGGAAATTTGACCCAAAAACCGTGGAGCTGATTGTTACAACCTACCAGGCTTCAGCATTACTGCTTTTTAATTCGTCAGATAGACTGAGTTACTCAGAGATAATGACTCAGTTAAACTTATCTGATGATGATGTTATTAGACTGCTGCATTCCTTATCATGTGCCAAGTACAAGATTCTCAACAAGGAGCCAAATACAAAAACAATATCATCCACTGATTATTTTGAATTTAATTCTAAATTTACTGACAAAATGAGGAGAATCAAGATTCCGCTTCCTCCTGTGGATGAGAAGAAAAAAGTTATTGAGGATGTTGACAAGGACAGAAGATATGCTATTGATGCCTCAATTGTGCGTATTATGAAGAGTCGTAAAGTTTTGGGCTACCAACAGTTAGTCATGGAGTGCGTTGAGCAGTTGGGTCGCATGTTTAAGCCTGACGTCAAGGCTATTAAAAAGCGGATTGAAGATTTGATTTCTCGTGACTACTTGGAAAGAGACAAAGATAATGCTAATATGTTCAAGTACTTGGCTTGA 1854 0.3954 MSMSERKTIDLEQGWDFMQKGITKLKNILEGLPEPQFSSEDYMMLYTTIYNMCTQKPPHDYSQQLYDKYKESFEEYIVSTVLPSLREKHDEFMLRELVKRWANHKIMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYKELNGKVRDAVISLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDHYENDFEAAMLKDTSAYYSRKASNWILEDSCPDYMLKVFVRKVIELHDKYLAYVNDCFQNHTLFHKALKEAFEVFCNKGVAGSSSAELLASFCDNILKKGGSEKLSDEAIEETLEKGSCLVVFRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLAKENQTSFEEYLSNNPNADPGIDLTVTVLTTGFWPSYKSFDLNLPAEMIRCVEVFKEFYQTKTKHRKLTWIYSLGTCNISGKFDPKTVELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVIRLLHSLSCAKYKILNKEPNTKTISSTDYFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGYQQLVMECVEQLGRMFKPDVKAIKKRIEDLISRDYLERDKDNANMFKYLA 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00342 617 PANTHER CULLIN 226 613 IPR045093 -
Pumo4g00342 617 Gene3D Cullin Repeats 272 376 - -
Pumo4g00342 617 FunFam Cullin-1 534 617 - -
Pumo4g00342 617 Pfam Cullin protein neddylation domain 547 609 IPR019559 -
Pumo4g00342 617 Gene3D Cullin Repeats 142 259 - -
Pumo4g00342 617 SUPERFAMILY Cullin homology domain 272 530 IPR036317 -
Pumo4g00342 617 ProSiteProfiles Cullin family profile. 273 492 IPR016158 -
Pumo4g00342 617 Gene3D Cullin Repeats 3 141 - -
Pumo4g00342 617 Gene3D Cullin; Chain C, Domain 2 380 533 - -
Pumo4g00342 617 SMART cul_2 306 442 IPR016158 -
Pumo4g00342 617 Pfam Cullin family 227 520 IPR001373 GO:0006511|GO:0031625
Pumo4g00342 617 SUPERFAMILY Cullin repeat-like 11 268 IPR016159 -
Pumo4g00342 617 SMART Cullin_Nedd8_2 544 611 IPR019559 -
Pumo4g00342 617 FunFam Cullin-1, putative 5 141 - -
Pumo4g00342 617 SUPERFAMILY "Winged helix" DNA-binding domain 532 617 IPR036390 -
Pumo4g00342 617 Gene3D - 534 617 IPR036388 -
Pumo4g00342 617 FunFam Cullin-1 like 380 533 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00342 Pumo-Chr4 4790018 4797039 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00342 K03347 - gmx:100793682 750.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00342 4 4790018 4797039 Pumo2g01418 2 21024361 21034425 PCT
Pumo2g00571 2 9127965 9150133 Pumo4g00342 4 4790018 4797039 PCT