Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01418 ATGTGCACTCAGAAGCCTCCCCATGACTATTCCCAACAACTGTATGACAAGTACAAGGAATCATTTGAAGAATACATCGTATCACAGGTATTACCTTCTTTGAGAGAGAAGCATGATGAATTTATGTTAAGAGAACTTGTAAAAAGGTGGGCAAACCATAAAATTATGGTTAGGTGGCTTTCTCGTTTCTTTCACTACTTGGACCGCTACTTTATTGCCCGGAGGTCACTTCCACCGCTTAATGAAGTTGGGTTGACGTGCTTCCGTGATTTGGTTTACAAGGAACTAAACGGGAAAGTGAGAGATGCAGTGATTTCCCTTATTGATCAAGAACGTGAAGGAGAGCAGATTGACCGAGCTCTATTGAAGAATGTATTAGATATATTTGTTGAAATTGGAATGGGGCAAATGGATCACTATGAGAATGATTTTGAAGCTGCCATGCTCAAAGACACTTCTGCTTATTATTCTCGAAAGGCTTCAAACTGGATCCTTGAAGATTCTTGTCCAGACTATATGCTCAAGGCTGAGGAGTGCTTAAAACGGGAGAAAGATAGGGTTGCCCATTACTTGCACTCTAGCAGTGAGCCAAAGTTATTAGAGAAAGTTCAACATGAACTGTTGTCTGTATATGCGAACCAACTACTTGAAAAGGAGCATTCCGGATGTCATGCATTACTTAGAGATGACAAGGTTGAAGACTTGTCAAGGATGTTCAGGCTCTTCTCTAAAATACCCCGAGGTTTAGATCCTGTTTCCAGTATATTTAAGCAGCATGTGACCGCTGAAGGCATGGCATTAGTGAAGTTGGCTGAAGATGCAGTGAGTACCAAAAAGGTATTTTTCCTTATTTATTCTGTGGTTTTTGTGCGGAAGGTTATTGAGCTGCATGACAAGTACCTGGCATATGTGAATGATTGTTTCCAAAATCATACACTTTTCCACAAGGCTCTTAAGGAGGCTTTTGAGATCTTTTGCAACAAGGGTGTCGCTGGAAGCTCAAGTGCAGAACTGCTTGCCACTTTTTGTGACAATATTCTTAAGAAAGGAGGAAGTGAAAAATTGAGTGATGAAGCAATTGAAGAAACTCTTGAAAAGGTTGTCAAGTTGCTTGCCTATATTAGCGACAAAGATTTGTTTGCTGAATTTTACAGGAAGAAGCTTGCTCGAAGGCTCCTTTTTGACAAGAGTGCCAATGATGATCATGAGAGAAGTATTTTGACAAAACTGAAGCAACAATGTGGTGGTCAATTTACCTCGAAGATGGAAGGAATGGTTACAGATTTGACATTGGCAAAGGAGAACCAAACGAGCTTTGAGGAGTATTTAAGCAATAATCCTAATGCAGACCCTGGAATAGACTTGACGGTTACAGTTCTGACTACTGGCTTCTGGCCTAGTTACAAATCTTTTGACCTCAATCTTCCAGCAGAAATGGTTAGATGTGTTGAAGTTTTCAAGGAATTTTATCAAACAAAAACTAAGCACAGAAAACTTACTTGGATTTATTCCTTGGGAACCTGCAACATTAGTGGGAAATTTGAACCAAAAACTGTGGAGCTGATTGTAACAACTTACCAGGCTTCGGCATTGCTTCTATTTAATTCCTCAGATAGACTGAGTTATTCGGAGATAATGACTCAGTTAAACTTATCTGATGACGACGTTATTAGACTGCTCCACTCCTTGTCATGTGCCAAGTACAAGATTCTTAACAAGGAACCAAACACGAAAACAATATCTTCTACCGACTATTTTGAATTTAATTCAAAATTTACAGACAAAATGAGGAGGATCAAGATTCCTCTTCCTCCTGTTGATGAGAAGAAAAAAGTAATTGAGGATGTTGACAAAGACAGAAGATATGCTATTGATGCCTCAATTGTGCGTATTATGAAGAGTCGGAAGGTGTTAAATTACCAACAGTTAGTAATGGAGTGTGTTGAGCAGTTGGGTCGCATGTTTAAGCCGGATGTCAAGGCAATTAAGAAGCGGATTGAAGATTTGATCTCTCGAGACTACTTGGAGAGAGACAAAGATAATGCAAATTTGTTCAGGTACTTGGCGTGA 2070 0.3957 MCTQKPPHDYSQQLYDKYKESFEEYIVSQVLPSLREKHDEFMLRELVKRWANHKIMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLVYKELNGKVRDAVISLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDHYENDFEAAMLKDTSAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVAHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSSIFKQHVTAEGMALVKLAEDAVSTKKVFFLIYSVVFVRKVIELHDKYLAYVNDCFQNHTLFHKALKEAFEIFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEETLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLAKENQTSFEEYLSNNPNADPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVRCVEVFKEFYQTKTKHRKLTWIYSLGTCNISGKFEPKTVELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVIRLLHSLSCAKYKILNKEPNTKTISSTDYFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLNYQQLVMECVEQLGRMFKPDVKAIKKRIEDLISRDYLERDKDNANLFRYLA 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01418 689 SUPERFAMILY Cullin homology domain 333 602 IPR036317 -
Pumo2g01418 689 SUPERFAMILY Cullin repeat-like 1 329 IPR016159 -
Pumo2g01418 689 Gene3D Cullin Repeats 216 334 - -
Pumo2g01418 689 ProSiteProfiles Cullin family profile. 334 564 IPR016158 -
Pumo2g01418 689 FunFam Cullin-1 like 335 448 - -
Pumo2g01418 689 FunFam Cullin-1, putative 216 334 - -
Pumo2g01418 689 Gene3D - 606 689 IPR036388 -
Pumo2g01418 689 Pfam Cullin protein neddylation domain 619 681 IPR019559 -
Pumo2g01418 689 Gene3D Cullin Repeats 335 448 - -
Pumo2g01418 689 SMART cul_2 365 514 IPR016158 -
Pumo2g01418 689 FunFam Cullin-1 like 452 605 - -
Pumo2g01418 689 Pfam Cullin family 1 592 IPR001373 GO:0006511|GO:0031625
Pumo2g01418 689 FunFam Cullin-1 606 689 - -
Pumo2g01418 689 Gene3D Cullin; Chain C, Domain 2 452 605 - -
Pumo2g01418 689 Gene3D Cullin Repeats 1 90 - -
Pumo2g01418 689 Gene3D Cullin Repeats 91 213 - -
Pumo2g01418 689 SUPERFAMILY "Winged helix" DNA-binding domain 604 689 IPR036390 -
Pumo2g01418 689 SMART Cullin_Nedd8_2 616 683 IPR019559 -
Pumo2g01418 689 PANTHER CULLIN 1 684 IPR045093 -
Pumo2g01418 689 FunFam Cullin-1, putative 91 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01418 Pumo-Chr2 21024361 21034425 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01418 K03347 - gmx:100784626 1339.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01418 2 21024361 21034425 Pumo2g01418 2 21024361 21034425 ECH
Pumo4g00342 4 4790018 4797039 Pumo2g01418 2 21024361 21034425 PCT