Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00179 ATGAAAGCGATCGCGTTGTGCTTGTTAGTGTCAAGCCTGTTGCTTTCTGCGGTGTCTTGTGCACCGAATGATGGGCTGCGTAGGATTGGGCTGAAGAAGATTAAATTGGACCCTAACAACAGGCTTGCTGCTCGAATTGGGTCCAAGGATGTTGATTCTTTCCGGGCTTCCATTAGAAAGTTTCATCTCCAAAACAACTTTGGTGGCGCTGAGGAAACCGATATTGTTGCGTTAAAGAATTACTTGGATGCACAGTACTTCGGTGAAATAGCTATTGGAACATCTCAAAAGTTCACTGTCATTTTCGACACAGGCAGCTCTAATTTATGGGTGCCATCATCTAAATGTACCTTCTCGGTTGCATGCTACTTCCATGCTAAGTACAAGTCTAGCAAATCTAGTACTTACAGGAAAAATGGGACTGCTGCTGCAATTCAGTATGGTACCGGAGCAATTTCTGGTTTCTTTAGCTACGACAGTGTCAGAGTTGGTGACATAGTTGTAAAGAACCAGGAATTTATTGAAGCAACTAGGGAGCCTGGTGTTACATTTTTGGCAGCCAAGTTTGATGGTATACTGGGACTTGGATTTCAAGAGATATCAGTTGGAAATGCTGTTCCAGTGTGGTACAACATGGTTGACCAAGGTCTTATTAAGGAACCAGTATTTTCATTTTGGTTCAACCGCAAACCAGAGGAAGAGGAAGGGGGTGAGATTGTGTTTGGTGGTGTTGATCCTGCTCACTATAAGGGAAAGCACACTTATGTGCCTGTGACCAGAAAAGGATATTGGCAGTTTGATATGGGAGATGTACTTGTTGGTGGTAAACCCACTGGATATTGTGCTGATGGCTGTTCAGCCATTGCAGACTCAGGGACTTCTTTGTTGGCAGGTCCAACGACTGTAATAACTATGATAAACCATGCAATTGGAGCATCTGGAGTTATGAGCCAAGAATGCAAGACCGTTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGGCTGAAACACAGCCGAAGAAGATCTGTTCCCAAATTGGATTGTGTGCTTTTGATGGGACTCGTGGTGTTGATGTGGGGATCGAGAGCGTTGTGGATGAGAATGAAAGAAAATCATCTGGTGGTCTTCATGGTGCTGCTTGTTCTGCGTGTGAGATGGCAGTTGTTTGGATGCAGAACCAGCTGAGCCGAAATCAGACACAAGATCAGATACTAAGCTACATCAACCAGCTTTGCGATAAAATGCCTAGCCCGATGGGAGAATCAGCTGTTGACTGTGGGAATATCTCTTCATTACCTGTAGTGTCCTTTACTATTGGTGGAAGAACTTTTGACCTTCGCCCAGAGGAGTACATACTCAAGGTGGGTGAAGGTCCTGTGGCTCAGTGCATTAGTGGGTTTACTGCTATAGATATTCCACCTCCACGTGGCCCTCTCTGGATCCTTGGTGATGTCTTCATGGGGCGTTATCACACAGTATTTGATTTTGGAAAACTCAGAGTGGGATTTGCTGATGCTGCATAG 1530 0.4458 MKAIALCLLVSSLLLSAVSCAPNDGLRRIGLKKIKLDPNNRLAARIGSKDVDSFRASIRKFHLQNNFGGAEETDIVALKNYLDAQYFGEIAIGTSQKFTVIFDTGSSNLWVPSSKCTFSVACYFHAKYKSSKSSTYRKNGTAAAIQYGTGAISGFFSYDSVRVGDIVVKNQEFIEATREPGVTFLAAKFDGILGLGFQEISVGNAVPVWYNMVDQGLIKEPVFSFWFNRKPEEEEGGEIVFGGVDPAHYKGKHTYVPVTRKGYWQFDMGDVLVGGKPTGYCADGCSAIADSGTSLLAGPTTVITMINHAIGASGVMSQECKTVVAEYGQTILDLLLAETQPKKICSQIGLCAFDGTRGVDVGIESVVDENERKSSGGLHGAACSACEMAVVWMQNQLSRNQTQDQILSYINQLCDKMPSPMGESAVDCGNISSLPVVSFTIGGRTFDLRPEEYILKVGEGPVAQCISGFTAIDIPPPRGPLWILGDVFMGRYHTVFDFGKLRVGFADAA 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00179 509 SUPERFAMILY Saposin 316 418 IPR011001 -
Pumo4g00179 509 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 100 111 IPR001969 GO:0004190|GO:0006508
Pumo4g00179 509 ProSiteProfiles Peptidase family A1 domain profile. 86 506 IPR033121 -
Pumo4g00179 509 PRINTS Pepsin (A1) aspartic protease family signature 287 298 IPR001461 GO:0004190|GO:0006508
Pumo4g00179 509 PRINTS Pepsin (A1) aspartic protease family signature 482 497 IPR001461 GO:0004190|GO:0006508
Pumo4g00179 509 PRINTS Pepsin (A1) aspartic protease family signature 91 111 IPR001461 GO:0004190|GO:0006508
Pumo4g00179 509 PRINTS Pepsin (A1) aspartic protease family signature 237 250 IPR001461 GO:0004190|GO:0006508
Pumo4g00179 509 ProSiteProfiles Saposin B type domain profile. 315 355 IPR008139 -
Pumo4g00179 509 FunFam Lysosomal aspartic protease 72 313 - -
Pumo4g00179 509 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Pumo4g00179 509 Pfam Saposin-like type B, region 1 382 418 IPR007856 GO:0006629
Pumo4g00179 509 Gene3D Acid Proteases 244 509 IPR021109 -
Pumo4g00179 509 Gene3D - 315 418 - -
Pumo4g00179 509 FunFam Vacuolar aspartic proteinase 381 508 - -
Pumo4g00179 509 ProSiteProfiles Saposin B type domain profile. 379 420 IPR008139 -
Pumo4g00179 509 CDD phytepsin 76 507 IPR033869 GO:0004190
Pumo4g00179 509 Pfam Eukaryotic aspartyl protease 85 507 IPR033121 -
Pumo4g00179 509 Pfam Saposin-like type B, region 2 318 351 IPR008138 -
Pumo4g00179 509 SUPERFAMILY Acid proteases 27 508 IPR021109 -
Pumo4g00179 509 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 287 298 IPR001969 GO:0004190|GO:0006508
Pumo4g00179 509 FunFam Aspartic proteinase A1 315 418 - -
Pumo4g00179 509 Gene3D Acid Proteases 27 243 IPR021109 -
Pumo4g00179 509 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 14 506 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00179 Pumo-Chr4 2183649 2189246 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00179 K08245 - gmx:100779619 967.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00179 4 2183649 2189246 Pumo2g00342 2 5980292 5984978 PCT