Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00342 ATGAACAGGTCAATCAACATGGGAAACATGTCAAATGTGGTCGTGTTCTGTTTCTGTCTCTGGACCCTGTTGTTCTCCGTGGTGTTTTGTGCACCCAACGACGGGTTGCGCAGGATTGGACTGAAAAAGGTTAAATTGGACACCGATGACGTTACGGGGTTTAAGGATTTGCGGTCTTCAATTAGAAACCATCATCTTCAGAACATCCTTGGAGGCGCTGAGGACACCGATGTTGTGGCGCTGAAGAATTATTTGGACGCTCAGTACTATGGTGAAATAGCCATTGGTACCCCTCCTCAGAAGTTCACTGTGATTTTTGACACCGGTAGCTCTAATTTGTGGGTGCCATCATCTAAATGTTACTTCTCGATGGCATGTTTCATGCACGCTAGGTACAGGTCTAGCCAATCCAGTACCTACAGGGAAAATGGTACTTCTGCTGCAATTCAATATGGTACCGGAGCAATTTCTGGTTTCTTTAGCAATGACGATGTCAGTGTTGGTGACATAGTTGTAAAGGACCAGGAATTTATTGAAGCAACTAAAGAACCTGGAGTCACATTTGTGGCCGCTAAGTTTGATGGTATACTAGGACTTGGATTTCAAGACATATCAGTTGGATCTGCTGTTCCAGTGTGGTACAATATGGTTGAACAAGGTCTTGTAAGGGATCCAGTATTTTCATTTTGGCTAAATCGTAAACCAGAAGAAGAGAATGGAGGGGAGCTTGTTTTTGGTGGTGCTGATCCTGCTCACTACAAGGGCAAACATACTTATGTACCAGTGACACGAAAAGGATATTGGCAGTTTGACATGGGAGAAGTGCTTATTGCTGGTAAACCCACTGGATACTGTGCTAATGACTGTTCAGCAATTGCGGACTCTGGAACTTCTTTGTTGGCTGGTCCAACGACTGTAATTACTATGATAAATCAAGAAATTGGAGCATCTGGAGTTGTAAGCAAAGAATGCAGGTCCGTTGTCAATCAATATGGACAAACAATCTTGGAATTGCTCTTGGCTGAAGCAAAGCCAAAAAAGATCTGCTCACAAATTGGATTGTGTACCTTTGATGGGACTCATGGTGTTAGCATGGGTATCGAGAGTGTGGTGGATAAGAATGAAAGAAAATCATCTGCTGGCGTTCGTGATGCTACTTGTTCTGCATGTGAGATGGCTGTTATTTGGATGCAGAACCAGCTGAGGCAGAATCAGACAGAAGATAGGATAATAGACTATGTCAATGAGCTTTGTGATAAATTGCCTAATCCAATGGGACAATCATCTGTTGACTGTGGAAAGCTCTCTTCAATGCCTATTGTTTCCTTCACTATTGGTGGAAAAGTTTTTGACCTTTCACCAGAGGAGTATATACTGAAGGTGGGTGAAGGTCCTGAAGCCCAATGCATTAGTGGCTTTATTGCTTTGGATGTTCCTCCTCCTCGTGGCCCTCTATGGATCCTTGGAGATGTCTTCATGGGGCGCTATCACACCATCTTTGATTATGGTAAGCTGAGAGTCGGATTTGCTGAAGCAGCATAG 1542 0.4364 MNRSINMGNMSNVVVFCFCLWTLLFSVVFCAPNDGLRRIGLKKVKLDTDDVTGFKDLRSSIRNHHLQNILGGAEDTDVVALKNYLDAQYYGEIAIGTPPQKFTVIFDTGSSNLWVPSSKCYFSMACFMHARYRSSQSSTYRENGTSAAIQYGTGAISGFFSNDDVSVGDIVVKDQEFIEATKEPGVTFVAAKFDGILGLGFQDISVGSAVPVWYNMVEQGLVRDPVFSFWLNRKPEEENGGELVFGGADPAHYKGKHTYVPVTRKGYWQFDMGEVLIAGKPTGYCANDCSAIADSGTSLLAGPTTVITMINQEIGASGVVSKECRSVVNQYGQTILELLLAEAKPKKICSQIGLCTFDGTHGVSMGIESVVDKNERKSSAGVRDATCSACEMAVIWMQNQLRQNQTEDRIIDYVNELCDKLPNPMGQSSVDCGKLSSMPIVSFTIGGKVFDLSPEEYILKVGEGPEAQCISGFIALDVPPPRGPLWILGDVFMGRYHTIFDYGKLRVGFAEAA 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00342 513 Gene3D Acid Proteases 37 247 IPR021109 -
Pumo2g00342 513 Pfam Saposin-like type B, region 1 386 422 IPR007856 GO:0006629
Pumo2g00342 513 PRINTS Pepsin (A1) aspartic protease family signature 241 254 IPR001461 GO:0004190|GO:0006508
Pumo2g00342 513 PRINTS Pepsin (A1) aspartic protease family signature 486 501 IPR001461 GO:0004190|GO:0006508
Pumo2g00342 513 PRINTS Pepsin (A1) aspartic protease family signature 95 115 IPR001461 GO:0004190|GO:0006508
Pumo2g00342 513 PRINTS Pepsin (A1) aspartic protease family signature 291 302 IPR001461 GO:0004190|GO:0006508
Pumo2g00342 513 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 104 115 IPR001969 GO:0004190|GO:0006508
Pumo2g00342 513 SUPERFAMILY Saposin 320 422 IPR011001 -
Pumo2g00342 513 Pfam Saposin-like type B, region 2 322 355 IPR008138 -
Pumo2g00342 513 Gene3D Acid Proteases 249 513 IPR021109 -
Pumo2g00342 513 ProSiteProfiles Peptidase family A1 domain profile. 89 510 IPR033121 -
Pumo2g00342 513 FunFam Lysosomal aspartic protease 75 317 - -
Pumo2g00342 513 Pfam Eukaryotic aspartyl protease 88 512 IPR033121 -
Pumo2g00342 513 SUPERFAMILY Acid proteases 24 512 IPR021109 -
Pumo2g00342 513 FunFam Vacuolar aspartic proteinase 384 512 - -
Pumo2g00342 513 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 291 302 IPR001969 GO:0004190|GO:0006508
Pumo2g00342 513 FunFam Aspartic proteinase A1 319 422 - -
Pumo2g00342 513 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 26 511 IPR001461 GO:0004190|GO:0006508
Pumo2g00342 513 CDD phytepsin 79 511 IPR033869 GO:0004190
Pumo2g00342 513 ProSiteProfiles Saposin B type domain profile. 383 424 IPR008139 -
Pumo2g00342 513 Gene3D - 319 422 - -
Pumo2g00342 513 ProSiteProfiles Saposin B type domain profile. 319 359 IPR008139 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00342 Pumo-Chr2 5980292 5984978 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00342 K08245 - gmx:100801598 984.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00342 2 5980292 5984978 Pumo2g00342 2 5980292 5984978 ECH
Pumo4g00179 4 2183649 2189246 Pumo2g00342 2 5980292 5984978 PCT