Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo4g00076 ATGCGATTTCTAAAAGCAAGGGACTGGGATCCTTCCAAGGCACATAAAATGTTGGTTGACTGTTTAAATTGGAGAGTGCAGAATGAGATTGACAATATATTATCTAAACCAATTGTTCCTGCTGATTTATACAGAGCAGTGCGCGATTCACAACTCATAGGATTGTCAGGTTACTCAAGAGAGGGTCTGCCTGTCTTCTCAATTGGTGTTGGACTTGGCACATTTGACAAAGCATCTGTCCATTATTATGTGCAGTCACACATTCAAATTAATGAATATCGTGATCGTATAATCTTGCCTTCTGCATCAAAGAAGCATGAGCGACCTATTACCACTTGTATAAAGGTTTTAGACATGACTGGTCTGAAGTTATCAGCCCTGAATCAGATTAAGTTGTTAACTATTATATCATCCATTGATGATCTGAACTACCCTGAGAAGACGAATACTTATTACATTGTAAATGCTCCATACATATTCTCAGCTTGTTGGAAGGTTGTGAAGCCACTTTTACAAGAAAGGACAAGAAGAAAAATACAGGTGTTACCAGGTTGTGGACGAGATGAGCTGTTGAATATCATGGATTACTCGTCTCTGCCACATTGCTGTAGAAGAGAAGGCTCTGGATCATCCAGACGTTCTGAGAGTGGTAGTGAAAATTGCTATTCCTTGGATCATCCCTTCCATCAAGAGCTCTACAACCACATCAAGCAGCAAGCCAGACTCCGTGAAGCTGTTGAACCCATCAAACAGGGATCGTTTCATGTAGATTTTCCAGTACCTCCAGATGATGAAGTTGAGATTGCTGAGACTATAGAGTCAGAGTTACACAACTTTGAGAAAGGCAATGGTGTCTAA 858 0.4044 MRFLKARDWDPSKAHKMLVDCLNWRVQNEIDNILSKPIVPADLYRAVRDSQLIGLSGYSREGLPVFSIGVGLGTFDKASVHYYVQSHIQINEYRDRIILPSASKKHERPITTCIKVLDMTGLKLSALNQIKLLTIISSIDDLNYPEKTNTYYIVNAPYIFSACWKVVKPLLQERTRRKIQVLPGCGRDELLNIMDYSSLPHCCRREGSGSSRRSESGSENCYSLDHPFHQELYNHIKQQARLREAVEPIKQGSFHVDFPVPPDDEVEIAETIESELHNFEKGNGV 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo4g00076 285 SUPERFAMILY CRAL/TRIO N-terminal domain 1 34 IPR036273 -
Pumo4g00076 285 Pfam CRAL/TRIO domain 51 201 IPR001251 -
Pumo4g00076 285 SMART sec14_4 40 208 IPR001251 -
Pumo4g00076 285 SUPERFAMILY CRAL/TRIO domain 42 239 IPR036865 -
Pumo4g00076 285 Pfam CRAL/TRIO, N-terminal domain 2 20 IPR011074 -
Pumo4g00076 285 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 1 284 - -
Pumo4g00076 285 CDD SEC14 44 200 IPR001251 -
Pumo4g00076 285 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 40 200 IPR001251 -
Pumo4g00076 285 Gene3D - 1 249 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo4g00076 Pumo-Chr4 1135332 1140160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo4g00076 2 285 Acyl Lipid Metabolism Gene Families AT5G47730 74.296 1.47e-158 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo4g00076 K26544 - gmx:547507 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo4g00076 4 1135332 1140160 Pumo2g00237 2 4495902 4500072 PCT