Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g00237 ATGGGCCTTGTTTCCCAGGATGCCCTCAACCAACTCCAAGCTCTCATGGATCAAGTGCTACATGAGGAGGAGCCACTGCAGAGAACGTTTCAGAATGTTCATCAAGGATGTGTCACCGAAACCTTAATGCGGTTTCTAAAAGCAAGGGAGTGGAATGCTACCAAGGCCCATAAAATGATAGTCGATTGTTTAAAATGGAGAGTACAAAATGAGATTGACAACATATTATCGAAACCAATAATCCCTACTGATTTATACAGAGGCATTCGTGATTCACAACTTATAGGATTGTCAGGGTACTCGAGAGAGGGTCTTCCTGTCTTTGCAATTGGTGTTGGGCTTAGCACATTTGACAAAGCATCTGTCCATTATTATGTGCAGTCTCACATTCAAATTAACGAATATCGTGATCGTGTAATCTTGCCTTCTGCATCAAAGAAGCATGGGCAGCCTATTACCACATGTATAAAGGTTTTGGATATGACTGGTCTGAAGTTGTCGGCCCTGAATCAGATCAAGTTGTTAACAATAATATCATCCATTGATGATCTGAACTACCCTGAGAAAACAAATACTTATTACATTGTAAATGCCCCATACATATTTTCAGCTTGTTGGAAGGTTGTGAAGCCACTTTTACAAGAGAGGACAAGAAGAAAAGTGCAAGTCTTACCAGGTTGTGGGCGAGATGAGCTGTTGAAGATCATGGATCACGCTTCGCTGCCACATTTCTGTAGAAAAGAAGGCTCGGGATCATCCAGACATTCAGAGAATGGAAATGAAAATTGCTATTCCTTGGATCACCCTTTCCATCAGCAGCTCTACAATTACATCAAGGAGCAATCCAGAATCCATGAAGCTGTTGAACCCATCAAGCAGGGATCATTCCATGTAGATTTTCCTGAACCTCCTGCAGAGAAAGCAGAGATTGTCAAGACTTTAGAGTCTGAGCTACACAAGTTTAAGATCAGCAATGGAAATGCTGATTGA 990 0.4162 MGLVSQDALNQLQALMDQVLHEEEPLQRTFQNVHQGCVTETLMRFLKAREWNATKAHKMIVDCLKWRVQNEIDNILSKPIIPTDLYRGIRDSQLIGLSGYSREGLPVFAIGVGLSTFDKASVHYYVQSHIQINEYRDRVILPSASKKHGQPITTCIKVLDMTGLKLSALNQIKLLTIISSIDDLNYPEKTNTYYIVNAPYIFSACWKVVKPLLQERTRRKVQVLPGCGRDELLKIMDHASLPHFCRKEGSGSSRHSENGNENCYSLDHPFHQQLYNYIKEQSRIHEAVEPIKQGSFHVDFPEPPAEKAEIVKTLESELHKFKISNGNAD 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g00237 329 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 82 242 IPR001251 -
Pumo2g00237 329 Pfam CRAL/TRIO, N-terminal domain 24 62 IPR011074 -
Pumo2g00237 329 SUPERFAMILY CRAL/TRIO domain 84 280 IPR036865 -
Pumo2g00237 329 Pfam CRAL/TRIO domain 93 244 IPR001251 -
Pumo2g00237 329 SMART CRAL_TRIO_N_2 38 63 IPR011074 -
Pumo2g00237 329 SUPERFAMILY CRAL/TRIO N-terminal domain 27 79 IPR036273 -
Pumo2g00237 329 CDD SEC14 86 244 IPR001251 -
Pumo2g00237 329 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN 1 327 - -
Pumo2g00237 329 SMART sec14_4 89 250 IPR001251 -
Pumo2g00237 329 Gene3D - 4 292 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g00237 Pumo-Chr2 4495902 4500072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g00237 1 328 Acyl Lipid Metabolism Gene Families AT5G47730 73.780 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g00237 K26544 - gmx:100793867 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g00237 2 4495902 4500072 Pumo2g00237 2 4495902 4500072 ECH
Pumo4g00076 4 1135332 1140160 Pumo2g00237 2 4495902 4500072 PCT