Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03054 ATGACGCTTGGCTCAGGAGGATCCAGTGTCGTGGTTCCTAGGAACTTCAGATTGCTGGAGGAGCTTGAACGTGGAGAAAAAGGGATTGGAGATGGCACAGTTAGCTATGGAATGGATGACGGTGATGACATTTACATGCGCTCTTGGACTGGCACCATTATTGGCCCCCATAATACTGTACATGAAGGGAGAATTTATCAACTGAAGCTGTTCTGTGATAAAGACTACCCAGAAAAGCCCCCTAGTGTTCGGTTTCATTCACGGATCAACATGACTTGTGTTAATCATGAAACTGGAGTGGTTGAACCAAAGAAATTTGGTCTTCTTGCAAATTGGCAAAGAGAGTACACCATGGAGGATATACTGACCCAGCTGAAGAAGGAAATGGCTGCTCCTCATAACCGGAAGCTTGTCCAGCCTCCAGAAGGGACCTACTTTTAG 441 0.4603 MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLANWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03054 146 Gene3D Ubiquitin Conjugating Enzyme 4 146 IPR016135 -
Pumo3g03054 146 FunFam Ubiquitin-conjugating enzyme E2 variant 1C 4 146 - -
Pumo3g03054 146 SUPERFAMILY UBC-like 11 146 IPR016135 -
Pumo3g03054 146 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 46 134 - -
Pumo3g03054 146 SMART ubc_7 16 144 - -
Pumo3g03054 146 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 13 146 IPR000608 -
Pumo3g03054 146 Pfam Ubiquitin-conjugating enzyme 43 136 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03054 Pumo-Chr3 55541160 55544550 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03054 K10704 - pvy:116143857 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03054 3 55541160 55544550 Pumo3g03054 3 55541160 55544550 ECH
Pumo5g03241 5 81425976 81429980 Pumo3g03054 3 55541160 55544550 PCT