Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02580 ATGAGAACAGAGTTGAAGAAGAAGATATCCAAGTCTTCGTGGCCAAAATTTAATGTTAGAAAGTGGCTCAATATAAGGAGCAACGATGATAACTTTCACTCAGATTACTCTCTTCCAGAGGGGTGGCTGATGGATTCCACAAATGAATTGAAACATTCGGCATCAGAAATGGAGGCGCCACCTGTCAATGACATCGACACGCTCAACCTTAGGATGTTCGTGGGGACGTGGAATGTTGGAGGGAAGTCACCAAACGAAGGATTGAACTTGAGGGATTGGTTGATGTTGCCTTCACCAGCTGATATCTATGTCATTGGGTTCCAAGAAATCATACCTCTAAACGCAGGGAACGTGCTTGGGCCAGAGGACAGTGGCCCAGTATCGAAGTGGCTGAACCTTATTCGTCGAGCCTTGAACTCTAACACAAGCTCCAGTGGAGAAAGTTCTCCTACTACATCGTCTTTTAATAGTAGCCCAAGTGAACAACAACAACAACGCTATTATTGCCTAGCAGCAAGCAAACAAATGGTGGGTATCTTCTTGTGCGTGTGGGTACGTAAGGATCTTTACAAGCATGTCAGCAATTTAAAAGTGTCCTGCGTTGGTAGAGGCATCATGGGCTATTTAGGAAATAAGGGTTCAATATCAATTAGCATGACATTGTACCACACAACATTTTGCTTCGTTTGTACCCACTTGGCCTCCGGAGAGAAAGATGGTGATGAGGTGCGAAGAAATTTGGACGTCTCAGAAATCTTAAAGAAAACTAAATTTTCACACTCATTCAAGGCTCTTGGTCAACCACTCCCTCCTGAAAGCATATTAGAGCATGATAAGATTATTTGGCTTGGGGACTTGAATTATCGGCTTACTGCTGGTTACGAAGATACACTTGAGCTATTGAAGAAGAATGATTGGCAAGCATTATTAGAGAAGGATCAGCTAAGGATAGAGCAGAGAGCTGGTCGAGTATTCAAAGAGTGGAAGGAAGGGAAGATATATTTTGCTCCAACTTACAAATACTTATTCGATTCTGACCAATATGTTGCCCAAACTAATAAGTCCAAGGAAAAACGACGAACTCCGGCTTGGTGTGATCGAATTCTATGGAAAGGTGAAGGCGTGGAGCAGCTATGGTATGTGCGAGGAGAGTCCAAATTCTCAGACCACAGGCCAGTGTATTCACTATTCTCGGTTGACGTGGACTTGACATGTAACAAGCTAAGTCCCTCTATTGCTGCATCAGATAGCTCAATAATCTCAAGGTCGTGTTCCTCTAGATCCTTACCAAACGCTGCCTTGTCATCATCTTGCTTTGCTAAAGTTCAGGCAGAGGAACAACTCTTGTTACTAACAAAGGCACATAGACACCACACTTGCAGGGTTCTCACTTAG 1395 0.4351 MRTELKKKISKSSWPKFNVRKWLNIRSNDDNFHSDYSLPEGWLMDSTNELKHSASEMEAPPVNDIDTLNLRMFVGTWNVGGKSPNEGLNLRDWLMLPSPADIYVIGFQEIIPLNAGNVLGPEDSGPVSKWLNLIRRALNSNTSSSGESSPTTSSFNSSPSEQQQQRYYCLAASKQMVGIFLCVWVRKDLYKHVSNLKVSCVGRGIMGYLGNKGSISISMTLYHTTFCFVCTHLASGEKDGDEVRRNLDVSEILKKTKFSHSFKALGQPLPPESILEHDKIIWLGDLNYRLTAGYEDTLELLKKNDWQALLEKDQLRIEQRAGRVFKEWKEGKIYFAPTYKYLFDSDQYVAQTNKSKEKRRTPAWCDRILWKGEGVEQLWYVRGESKFSDHRPVYSLFSVDVDLTCNKLSPSIAASDSSIISRSCSSRSLPNAALSSSCFAKVQAEEQLLLLTKAHRHHTCRVLT 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02580 464 MobiDBLite consensus disorder prediction 140 159 - -
Pumo3g02580 464 Pfam Endonuclease/Exonuclease/phosphatase family 75 390 IPR005135 GO:0003824
Pumo3g02580 464 FunFam Type I inositol polyphosphate 5-phosphatase 8 51 423 - -
Pumo3g02580 464 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 19 409 IPR045849 GO:0004445
Pumo3g02580 464 SUPERFAMILY DNase I-like 67 402 IPR036691 -
Pumo3g02580 464 Gene3D Endonuclease/exonuclease/phosphatase 49 421 IPR036691 -
Pumo3g02580 464 SMART i5p_5 68 406 IPR000300 GO:0016791|GO:0046856
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02580 Pumo-Chr3 38915459 38920515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02580 69 401 Acyl Lipid Metabolism Gene Families AT1G65580 30.890 2.26e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02580 - - gmx:100795297 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02580 3 38915459 38920515 Pumo3g02580 3 38915459 38920515 ECH
Pumo5g02974 5 77641312 77647809 Pumo3g02580 3 38915459 38920515 PCT