Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02406 ATGGCAACCATCTCCGCTGCTATCACAACCCCATCGATCACCCGCGCAGGTCTTGTCCAAAAGCGGCCTATTGGGGTCTCATCTCCCGTTCTTGGTTTGCCAGCAATGGGTAAGGTGGGAAGAGTGAGTTGCTCCATGGAGGGAAAGCCTTCTTCTGTGAAGGAAAGCAGCTCAAGCATGATGGGGATGGGGGCATCTCTGATGGCAGCTGCCAGCGCAGCAGCCATGTCAGGCCCAGCCATGGCCTTGGTGGATGAGAGACTGAGCACTGAAGGAACCGGGCTTCCCTTTGGGCTCAGCAACAACCTTCTCGGTTGGATCCTGTTCGGTGTCTTTGGTCTTATCTGGGCTCTCTATTTTGTCTACACTTCCACTCTTGAAGAGGATGAAGAGTCAGGACTGTCCCTTTAA 411 0.5401 MATISAAITTPSITRAGLVQKRPIGVSSPVLGLPAMGKVGRVSCSMEGKPSSVKESSSSMMGMGASLMAAASAAAMSGPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFVYTSTLEEDEESGLSL 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02406 136 Pfam Photosystem II reaction centre W protein (PsbW) 1 136 IPR009806 GO:0009507|GO:0009523|GO:0015979
Pumo3g02406 136 Coils Coil 136 136 - -
Pumo3g02406 136 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 136 IPR009806 GO:0009507|GO:0009523|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02406 Pumo-Chr3 36526343 36528141 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02406 K02721 - gmx:100305788 207.608
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02406 3 36526343 36528141 Pumo3g02406 3 36526343 36528141 ECH
Pumo5g02813 5 75224414 75225320 Pumo3g02406 3 36526343 36528141 PCT