Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02268 ATGGACTTGCTTGCAACTTTGACTGCCGACAAGCCGGTGGTGATCTTCAGCAAGAGCACTTGTTGCATTAGCCATTCTGTGAAGGCTCTCATATGCAGCTTTGGTGCCAACCCTACGGTTATCGAGGTTGACAAAATGGCAAATGGTCAGAATATAGAGAGGGCACTCATTCAGCTGGGTTGTCGCCCAACTGTACCAGCAGTGTTCATTGGACAACAACTTGTAGGTGGTGCTGATGAACTCATAAGCCTCAACGTCCAAAACCAGCTTGCCCAATTGCTTTTGAGGGCTAGAGCTATATTTATCTGGAGTCCATAG 318 0.4748 MDLLATLTADKPVVIFSKSTCCISHSVKALICSFGANPTVIEVDKMANGQNIERALIQLGCRPTVPAVFIGQQLVGGADELISLNVQNQLAQLLLRARAIFIWSP 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02268 105 PANTHER GLUTAREDOXIN 2 101 IPR011905 -
Pumo3g02268 105 NCBIfam glutaredoxin-like family 6 101 IPR011905 -
Pumo3g02268 105 Pfam Glutaredoxin 13 75 IPR002109 -
Pumo3g02268 105 PRINTS Glutaredoxin signature 58 71 IPR014025 -
Pumo3g02268 105 PRINTS Glutaredoxin signature 72 85 IPR014025 -
Pumo3g02268 105 PRINTS Glutaredoxin signature 13 31 IPR014025 -
Pumo3g02268 105 ProSiteProfiles Glutaredoxin domain profile. 1 101 - -
Pumo3g02268 105 CDD GRX_GRXh_1_2_like 12 93 - -
Pumo3g02268 105 Gene3D Glutaredoxin 2 102 - -
Pumo3g02268 105 SUPERFAMILY Thioredoxin-like 2 98 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02268 Pumo-Chr3 34713526 34716329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02268 1 102 Miscellaneous Gene Families AT4G15700 50.000 2.58e-35 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02268 K03676 - gmx:106794948 177.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02268 3 34713526 34716329 Pumo3g02268 3 34713526 34716329 ECH
Pumo5g03356 5 82700710 82702067 Pumo3g02268 3 34713526 34716329 PCT