Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g01985 ATGTCTCAGAGCCCACCCCAAACCCTCGATTCCGATGAGGCACCTCAAACCACCCAATCCCCCGGTGATTCCCACTCCTCCTCCTCCACCCTCCTCCACCTCTCCTTCAACCAGGACTCCGGCTGCTTCGCCGCCGCCACCGACCGCGGGTTCCGCATCTACAACTGCGACCCCTTCCGCGAGATCTTCCGCCGCGACTTCGGACCCGGCGGCGGCGTCGGCCTCGTCCACATGCTCTTCCGCTGCAACATCCTGGCCTTCGTCGGCGGCGCCTCCGACCCCCGGTACCCTCCCAACAAGGTCATGATCTGGGACGACCACCAGTCCCGCTGCATCGGCGAACTCTCCTTCCGCTCCGAGGTCAAGGGCGTCCGCCTCCGCCGCGACCGAATCGTCGTCGTCCTCGCCCACAAGATCTTCGTCTACAACTTCGCCGATCTCAAGGTGCTCCACCAAATTGAGACCATTGCCAACCCTAAGGGCCTATGCGACCTCTCTCACGTTTCCGCAACGATGGTGTTGGTGTGCCCTGGATTGCAGAAGGGGCAGGTTAGGGTTGAGCACTACGCCTCCAAGAGGACCAAGTTCATCATGGCGCATGATTCCAGAATCGCGTGTTTTGCACTCACGCACGATGGGAGGCTGCTCGCCACGGCAAGCTCCAAGGGCACCCTCGTTAGGCTCTTCAATACCCTTGATGGTTCATTGCTCCAAGAGCTGCGGAGGGGTGCAGACAGAGCAGAGATATACAGCCTTGCTTTTTCTCCTACTGCGCAGTGGCTGGCTGTCTCAAGTGACAAGGGGACCGTTCATGTTTTCAACCTCAAGGTTGATTCCGGACTGCTGGGGCATGACAGATCGCATGGTACTTCTGAGGCAAATCCTGCTAGCCCCACCGCAGTTTCGTCTCTTTCCTTTTTTAAAGGTGTGCTACCCAAGTATTTTAGCTCAGAGTGGTCTGTGGCTCAATTTCGCTTGCAAGAAGGTTTGCAATATATTGTTGCATTTGGCCATCAAAAGAATACAGTTGTAATACTAGGCATGGATGGCAGCTTCTATCGATGTCAGTTTGATTCTGCGACCGGTGGAGAGATGACCCAACTTGAATATTACAATTTCCTAAAGGCAGAAGAGACATTCTAG 1143 0.5591 MSQSPPQTLDSDEAPQTTQSPGDSHSSSSTLLHLSFNQDSGCFAAATDRGFRIYNCDPFREIFRRDFGPGGGVGLVHMLFRCNILAFVGGASDPRYPPNKVMIWDDHQSRCIGELSFRSEVKGVRLRRDRIVVVLAHKIFVYNFADLKVLHQIETIANPKGLCDLSHVSATMVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTHDGRLLATASSKGTLVRLFNTLDGSLLQELRRGADRAEIYSLAFSPTAQWLAVSSDKGTVHVFNLKVDSGLLGHDRSHGTSEANPASPTAVSSLSFFKGVLPKYFSSEWSVAQFRLQEGLQYIVAFGHQKNTVVILGMDGSFYRCQFDSATGGEMTQLEYYNFLKAEETF 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g01985 380 FunFam Autophagy-related protein 18a isoform A 29 359 - -
Pumo3g01985 380 Gene3D - 28 359 IPR015943 GO:0005515
Pumo3g01985 380 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 26 373 - -
Pumo3g01985 380 SMART WD40_4 12 55 IPR001680 GO:0005515
Pumo3g01985 380 SMART WD40_4 190 230 IPR001680 GO:0005515
Pumo3g01985 380 SMART WD40_4 233 274 IPR001680 GO:0005515
Pumo3g01985 380 MobiDBLite consensus disorder prediction 1 30 - -
Pumo3g01985 380 Pfam WD domain, G-beta repeat 238 274 IPR001680 GO:0005515
Pumo3g01985 380 SUPERFAMILY WD40 repeat-like 29 276 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g01985 Pumo-Chr3 30994351 30997488 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g01985 K22991 - gmx:100787427 707.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g01985 3 30994351 30997488 Pumo3g01985 3 30994351 30997488 ECH
Pumo5g03375 5 82875362 82876380 Pumo3g01985 3 30994351 30997488 ECH
Pumo5g02742 5 74103165 74106700 Pumo3g01985 3 30994351 30997488 PCT