Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00885 ATGGTTCAGATCGCGAGGAGGAAGAAGGGACGGCCGTCGAAGGCGGATCTGTCGCGCCGCTCCGGCGAGTCTCCGGCCGCCGCGTCGCAGCCCGATCCCCGGCGGAGCCTCCGGCGCCGGAACGTGAGGTACAACATCATCGACTACGACGGCGATTACCTCGACGACGAGGAGGACGAGCGGAGGCGCGAGAAGAAGAAGCTCAAGCTCATGGCGAAGCTGAACCAGGACGGCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGCGAGAAGAAGAAGAAAACGAGACGGCACCACCGAACCACACTCGCGCCGCGCCGGGAGAAGAATACGAAGACGACGAAAACGAACAAAAGGAAGAGAACGAAAACGAACAAGAGGAAGAGAACGAAGAAGACGAAGACAGTGTGGTAAAGGGCAGAAAAGTGGAATCGAAAGGGCTCCACTCTGTTTCTGTTTCAGGAGCTCCGGTGATTCTTCAATCTGGGATTCCGTTGCCTGATAAGAGGACTCTGGAATTGATCCTTGACAAGCTTCAGAAGAAGGACACTTATGGTGTGTTTGCGGAGCCTGTTGATCCAGAAGAGCTTCCTGATTATCACGATGTGATCGAGCATCCCATGGACTTTGCCACTGTGAGGAAGAAGTTGGGAAATGGATCTTATACTACCTTAGAACAATTTGAGAGTGATGTATTTTTAATTTGCTCAAATGCAATGCAATACAATGCACCGGAGACTATATACCACAAACAGGCACGATCAATACAAGAACTTGGACGGAAAAAGTTTGAGAAGTTAAGGATTGGCTTTGAACGCTCTCAGATTGAGCTGAAATCAGAACTAAAAGCAGGATCTAATTATTTGGTTAAGAAGCAACCAAAGAAGCCACTGGCACGTGCCTCACAAGAACCTGTTGGCTCTGATTTCTCCTCAGGAGCAACTCTTGCTACTATTGCAGATATACAGCCAACTTCCCATCTGATGCAAGGTGGTAGATGTGAGAGGTCTGGCAATATTGATGGTATTTTGGAGGCAAATGCTTTCTGGATTGATGCAAATCAAGAGAAAGCTGAAGATGTTTTGTCTGGGAAAGGTCTTCCCTCTAAGTGGGGAAGGAAGTCCTTTGTGCTTGACGAAAGTCGTCGTGCATCTTATAATATGTCCAATCAACCAATTGCTAGATCAGATTCAATATTTATGACCTTTGAGAGTGGAATGAAGCATCTGGCTTACTGTATTTGGCTTCCTTTTACTCATATTGTCAAAACAAAAAACATTACAGTTGGACTTCATGCAGAATATTCCTATGCTAGGAGTTTGGCTCGTTTTAGTGCATCTCTAGGACCTATTGCTTGGAAAATTGCTTCCCACAGGATTCAGCAGGCACTGCCAGCTGAATGTAAATTTGGTCATGGTTGGGTTGGAGAGTATGAACCGCTTCCAACCCCAATATTAATGGTTAATAATCGTGTCCAAAAGGAAGCTAGTTTGGTTATGAAGTTGCATTCCACTACTGAATTGCCAAAGGGTAACCAGAATTGTAAGAATGTGGAATCCAGCATTGAGCATCCTGTTAATGGACATATGCTTGAGGGAAAACATCCTTCAATGCCTGATTCTGAAGGAAAACCTCTCTTTGGTTCTGCTGGAGTAAGGCTCAGTGCTCATGTCAACATCCTAAATCAGGAGCAGAATGCCCAATCCAGGAAATTAGGCAATTCTGAGAATAAGGGTTTGAAACAAAATAATAATGGTCTGGTTGCAAAGTTTACAAGTAATGCTCCTGCAGCAGAGTCCAAGCCCAGAGAGATGGTGCCAAGGAACATGTTCAAACAGCCAGATCCTAATGGAGTTGTTAGTGGAGAGTTGCCTAATGGAAAAGTCACGAATACAAGTTTGAATAGACAGGTGACTGGTTCATCACCTGAAAGTACATCAAACCAATCAAGCAGAGCAGCTCCTGCTATTGTCCATGGGCAGGAGCAGGGTCCTAGTGACCCAGCTCAATTGATGAGAATGTTTGCAGAAAGGGCTCAAAAGCAACACACTTCTTCCAATCATTCACTTGTTGATACTCCGCCAGTGACACTATCAGGTCCATCTGGACAGAGAGATGACTCGGGCAATGCTTCAGCAGCAGCTGCCCAGTGCATGGATGTCTGTTGGGGCAGTAGGATATTTGCAGATTCTTTGTACAACTCAACAAGAGAGTTGCATCAGCATATTTCAAGAATTCGGGGGGAGTTTCCCTCTGGTGGAATGCCTTTCCAACCATTTCAAGCAGTTGCTCCTCAACCTATTCACACAGGTGCCGTTTCACAGTTTCCCAACCGGCCTATGGTTTTCCCACAGTTAGCATCTGCTGACAAATCTAGATTTCAAATGCAGTCCCCTTGGCGAGGTCTCAGTCCTCGTAGCCAGTCAAGGCAGAAACAGGAAACCCTTCCACCTGACTTGAATATTGGTTTTCAATCTCCAGGGTCACCTGCAAAACAATCTTCTGGTGTCCTTGTTGACTCACAGCAACCAGACCTAGCTTTGCAACTATGA 2553 0.4614 MVQIARRKKGRPSKADLSRRSGESPAAASQPDPRRSLRRRNVRYNIIDYDGDYLDDEEDERRREKKKLKLMAKLNQDGEEEEEEEEEEEREEEENETAPPNHTRAAPGEEYEDDENEQKEENENEQEEENEEDEDSVVKGRKVESKGLHSVSVSGAPVILQSGIPLPDKRTLELILDKLQKKDTYGVFAEPVDPEELPDYHDVIEHPMDFATVRKKLGNGSYTTLEQFESDVFLICSNAMQYNAPETIYHKQARSIQELGRKKFEKLRIGFERSQIELKSELKAGSNYLVKKQPKKPLARASQEPVGSDFSSGATLATIADIQPTSHLMQGGRCERSGNIDGILEANAFWIDANQEKAEDVLSGKGLPSKWGRKSFVLDESRRASYNMSNQPIARSDSIFMTFESGMKHLAYCIWLPFTHIVKTKNITVGLHAEYSYARSLARFSASLGPIAWKIASHRIQQALPAECKFGHGWVGEYEPLPTPILMVNNRVQKEASLVMKLHSTTELPKGNQNCKNVESSIEHPVNGHMLEGKHPSMPDSEGKPLFGSAGVRLSAHVNILNQEQNAQSRKLGNSENKGLKQNNNGLVAKFTSNAPAAESKPREMVPRNMFKQPDPNGVVSGELPNGKVTNTSLNRQVTGSSPESTSNQSSRAAPAIVHGQEQGPSDPAQLMRMFAERAQKQHTSSNHSLVDTPPVTLSGPSGQRDDSGNASAAAAQCMDVCWGSRIFADSLYNSTRELHQHISRIRGEFPSGGMPFQPFQAVAPQPIHTGAVSQFPNRPMVFPQLASADKSRFQMQSPWRGLSPRSQSRQKQETLPPDLNIGFQSPGSPAKQSSGVLVDSQQPDLALQL 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00885 850 MobiDBLite consensus disorder prediction 110 134 - -
Pumo1g00885 850 SUPERFAMILY Bromodomain 165 267 IPR036427 GO:0005515
Pumo1g00885 850 MobiDBLite consensus disorder prediction 794 850 - -
Pumo1g00885 850 Gene3D - 167 286 IPR036427 GO:0005515
Pumo1g00885 850 MobiDBLite consensus disorder prediction 679 711 - -
Pumo1g00885 850 PRINTS Bromodomain signature 183 196 IPR001487 GO:0005515
Pumo1g00885 850 PRINTS Bromodomain signature 213 231 IPR001487 GO:0005515
Pumo1g00885 850 PRINTS Bromodomain signature 197 213 IPR001487 GO:0005515
Pumo1g00885 850 PRINTS Bromodomain signature 231 250 IPR001487 GO:0005515
Pumo1g00885 850 ProSiteProfiles Bromodomain profile. 180 250 IPR001487 GO:0005515
Pumo1g00885 850 MobiDBLite consensus disorder prediction 33 76 - -
Pumo1g00885 850 MobiDBLite consensus disorder prediction 567 711 - -
Pumo1g00885 850 MobiDBLite consensus disorder prediction 1 142 - -
Pumo1g00885 850 Pfam Bromodomain 174 254 IPR001487 GO:0005515
Pumo1g00885 850 PANTHER BROMODOMAIN CONTAINING PROTEIN 5 849 - -
Pumo1g00885 850 ProSitePatterns Bromodomain signature. 186 242 IPR018359 -
Pumo1g00885 850 Coils Coil 108 136 - -
Pumo1g00885 850 MobiDBLite consensus disorder prediction 624 656 - -
Pumo1g00885 850 MobiDBLite consensus disorder prediction 567 591 - -
Pumo1g00885 850 Coils Coil 54 98 - -
Pumo1g00885 850 CDD Bromodomain 168 264 - -
Pumo1g00885 850 MobiDBLite consensus disorder prediction 77 94 - -
Pumo1g00885 850 SMART bromo_6 161 269 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00885 Pumo-Chr1 13433173 13439411 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00885 K22184 - gmx:100799986 1318.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00885 1 13433173 13439411 Pumo1g00885 1 13433173 13439411 ECH
Pumo1g00885 1 13433173 13439411 Pumo9g01884 9 47968035 47971294 PCT