Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00816 ATGAATGTTCTGGCTCTAGGGCGCTTCCTCACTTCCCCCTTATATAAGACTTCCCCTCTCACTCCCTCCCCAATCCAATTCACACCCATTTTTCTTCTTCATCCCCCAAAGTTCCAATCTTTGCACGCAATTCACCCTTTATCTCTCAATTTCTCTTCTTCCATGGCCACTTGTGTCGATGCTCCAACCCCTCTTTCTCGAAAACCTAACGGATCCCAATCCGATGATCATTCCTTCAATTACATGAAATTCTGCAGACCCACTTTCTCTGATCGCGTTCCCTGCATTCCCATTTGCAAGAATCGTGACACGGCCTTCACACGTGTGGAGGAGTTGGACACACGTGTGGAGGATGATGTTGAGGTTGGGGTTGTGGAGGGTGTTGATCTTTGGTTGAAGATTCAAGAGGAAGCAAGGTTAGATGTTGATCAAGAACCAATTTTATCTGGCTACTATTTCAGTTCCATTTTGTCTCACAAATCCTTGGAGAGTGCCTTGGCCAACAACCTCTCCACCAATTTGAGCAGTTTGAGCCTTCCAAGCAGCACCCTTTTTGATCTTTTCATGGGTGTTTTGGTTGATGATGGAGATGACATCATAGGTGCTGTGAAGGATGATTTGGTAGCTGTTAAGGAGAGGGACCCTGCATGCATAAGTTATGTGCATTGTTTGTTGAATTTCAAGGGGTTTTTGGCATGCCAGGCTCATAGGATTGCTCACAAATTGTGGCTACAAGGGAGGAAGGTCTTGGCACTGTTGATTCAGAATAGGGTGTCTGAGGTTTTTGCTGTGGATATTCACCCTGGTGCAAAAATTGGACGTGGGATTTTGTTGGATCATGCAACTGGGCTTGTTGTGGGGGAGACTGCAGTGATTGGGAATAATGTGTCAATTTTGCATAATGTGACATTGGGAGGGACTGGTAAAGCAAGTGGGGATAGACACCCTAAAATTGGTGATGGGGTGTTGATAGGTGCAGGGACTTGTATTTTGGGGAATATTAAGATTGGTGATGGGGCTAAGATTGGTGCTGGTTCTGTGGTGTTGAAGGAAGTGCCACCAAGGACTACTGCAGTTGGGAACCCTGCTAAGTTGGTTGGAGGGAAGGATAACCCCATTAAATTGGATAAGATGCCTAGTTTTACCATGGACCATACTTCATGGTCTGATTATGTTATCTAG 1182 0.4543 MNVLALGRFLTSPLYKTSPLTPSPIQFTPIFLLHPPKFQSLHAIHPLSLNFSSSMATCVDAPTPLSRKPNGSQSDDHSFNYMKFCRPTFSDRVPCIPICKNRDTAFTRVEELDTRVEDDVEVGVVEGVDLWLKIQEEARLDVDQEPILSGYYFSSILSHKSLESALANNLSTNLSSLSLPSSTLFDLFMGVLVDDGDDIIGAVKDDLVAVKERDPACISYVHCLLNFKGFLACQAHRIAHKLWLQGRKVLALLIQNRVSEVFAVDIHPGAKIGRGILLDHATGLVVGETAVIGNNVSILHNVTLGGTGKASGDRHPKIGDGVLIGAGTCILGNIKIGDGAKIGAGSVVLKEVPPRTTAVGNPAKLVGGKDNPIKLDKMPSFTMDHTSWSDYVI 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00816 393 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 324 352 IPR018357 GO:0016740
Pumo1g00816 393 SUPERFAMILY Trimeric LpxA-like enzymes 127 367 IPR011004 -
Pumo1g00816 393 FunFam Serine acetyltransferase 265 391 - -
Pumo1g00816 393 Gene3D Hexapeptide repeat proteins 265 384 - -
Pumo1g00816 393 Pfam Bacterial transferase hexapeptide (six repeats) 315 349 IPR001451 -
Pumo1g00816 393 FunFam serine acetyltransferase 1, chloroplastic 114 264 - -
Pumo1g00816 393 Pfam Serine acetyltransferase, N-terminal 130 235 IPR010493 GO:0005737|GO:0006535|GO:0009001
Pumo1g00816 393 NCBIfam serine O-acetyltransferase 203 364 IPR005881 GO:0005737|GO:0006535|GO:0009001
Pumo1g00816 393 CDD LbH_SAT 262 362 IPR045304 -
Pumo1g00816 393 SMART SATase_N_2_a 130 235 IPR010493 GO:0005737|GO:0006535|GO:0009001
Pumo1g00816 393 Gene3D serine acetyltransferase, domain 1 118 264 IPR042122 -
Pumo1g00816 393 PANTHER SERINE ACETYLTRANSFERASE 125 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00816 Pumo-Chr1 12388949 12390807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00816 130 391 Miscellaneous Gene Families AT2G17640 53.053 1.62e-88 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00816 K00640 - gmx:606507 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00816 1 12388949 12390807 Pumo1g00816 1 12388949 12390807 ECH
Pumo1g00816 1 12388949 12390807 Pumo9g01803 9 47162862 47164637 PCT